Detail information of GWHGAAEX016203/evm.TU.scaffold_73.126


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428201025|ref|YP_007079614.1|7.00E-102twin arginine targeting protein translocase subunit TatC [Pleurocapsa sp. PCC 7327]
nrgi|743794417|ref|XP_010924165.1|1.52E-141PREDICTED: sec-independent protein translocase protein TATC, chloroplastic-like [Elaeis guineensis]
Swissprottr|Q9SJV5|TATC_ARATH1.00E-134Sec-independent protein translocase protein TATC, chloroplastic (Precursor)
trEMBLtr|V7BAS1|V7BAS1_PHAVU1.00E-140Uncharacterized protein {ECO:0000313|EMBL:ESW14982.1}
TAIRAT2G011103.00E-136Sec-independent periplasmic protein translocase

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007628545352875815-
Transcript Sequence

Network for GWHGAAEX016203

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00902.17TatC1103188.50E-61
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03118tatC Protein export map03060
Bacterial secretion systemmap03070

Gene Ontology

GO term OntologyName
GO:0016021Cellular Componentintegral component of membrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms41.720
SRR2545915Juvenile tuber33.910
SRP108465SRR5643513five period of Gastrodia elata20.670
SRR5643514five period of Gastrodia elata21.930
SRR5643515five period of Gastrodia elata18.590
SRR5643524five period of Gastrodia elata23.860
SRR5643525five period of Gastrodia elata33.090
SRR5643528five period of Gastrodia elata31.580
SRR5643658five period of Gastrodia elata36.330
SRR5643659five period of Gastrodia elata23.860
SRR5643660five period of Gastrodia elata25.180
SRR5643661five period of Gastrodia elata20.330
SRR5643662five period of Gastrodia elata27.160
SRR5643663five period of Gastrodia elata26.820
SRR5643664five period of Gastrodia elata28.920
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_124.380
SRR6049655Rhizomagastrodiae_C368-T10_good_126.640
SRR6049656Rhizomagastrodiae_C368-T07_good_122.590
SRR6049657Rhizomagastrodiae_C368-T07_good_127.640
SRR6049658Rhizomagastrodiae_C368-T04_good_125.330
SRR6049659Rhizomagastrodiae_C368-T04_good_125.780
SRR6049660Rhizomagastrodiae_C368-T01_good_123.590
SRR6049661Rhizomagastrodiae_C368-T04_good_123.460
SRR6049662Rhizomagastrodiae_C368-T01_good_124.790
SRR6049663Rhizomagastrodiae_C368-T01_good_122.530
SRR6049664Rhizomagastrodiae_C368-T10_good_126.380
SRR6049665Rhizomagastrodiae_C368-T10_good_126.380
SRP279888GastroGastrodia elata tuber 37.86
JuvenJuvenile tuber32.30
Mother_GastroMother tuber of Gastrodia elata 31.72
Mother_JuvenMother tuber of Juvenile 29.17