Detail information of GWHGAAEX016204/evm.TU.scaffold_73.127
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1971 | 2.00E-173 | Lysyl hydroxylase |
| nr | gi|743758011|ref|XP_010924606.1| | 0 | PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950-like [Elaeis guineensis] |
| Swissprot | tr|Q3ED68|Y1295_ARATH | 8.00E-160 | Uncharacterized PKHD-type hydroxylase At1g22950 |
| trEMBL | tr|M0S2B0|M0S2B0_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P23020_001} |
| TAIR | AT3G18210 | 2.00E-173 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000076 | 2889620 | 2939102 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016204
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016705 | Molecular Function | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0005506 | Molecular Function | iron ion binding |
| GO:0031418 | Molecular Function | L-ascorbic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 24.120 |
| SRR2545915 | Juvenile tuber | 35.950 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 18.830 |
| SRR5643514 | five period of Gastrodia elata | 22.030 | |
| SRR5643515 | five period of Gastrodia elata | 17.060 | |
| SRR5643524 | five period of Gastrodia elata | 18.560 | |
| SRR5643525 | five period of Gastrodia elata | 15.140 | |
| SRR5643528 | five period of Gastrodia elata | 9.420 | |
| SRR5643658 | five period of Gastrodia elata | 14.410 | |
| SRR5643659 | five period of Gastrodia elata | 16.970 | |
| SRR5643660 | five period of Gastrodia elata | 18.050 | |
| SRR5643661 | five period of Gastrodia elata | 17.730 | |
| SRR5643662 | five period of Gastrodia elata | 16.530 | |
| SRR5643663 | five period of Gastrodia elata | 15.480 | |
| SRR5643664 | five period of Gastrodia elata | 14.100 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 19.280 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 20.730 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 18.990 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.820 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 14.520 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.150 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.110 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.160 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 22.680 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 18.280 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 19.590 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 19.590 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.84 |
| Juven | Juvenile tuber | 19.75 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 11.23 | |
| Mother_Juven | Mother tuber of Juvenile | 11.39 |