Detail information of GWHGAAEX016205/evm.TU.scaffold_73.129
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|470170096|ref|YP_007550982.1| | 3.00E-15 | putative signal transduction protein with CBS domains [Azoarcus sp. KH32C] |
| nr | gi|743803111|ref|XP_010926834.1| | 0 | PREDICTED: CBS domain-containing protein CBSCBSPB1-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|P0DH79|Y5064_ARATH | 0 | CBS domain-containing protein CBSCBSPB5 |
| trEMBL | tr|M0TJY4|M0TJY4_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P22980_001} |
| TAIR | AT5G50640 | 0 | CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000076 | 2972054 | 2997870 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016205
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00571.27 | CBS | 55 | 100 | 0.00029 |
| PF00571.27 | CBS | 114 | 158 | 1.20E-06 |
| PF00571.27 | CBS | 224 | 268 | 0.0017 |
| PF00571.27 | CBS | 282 | 327 | 6.00E-05 |
| PF00564.23 | PB1 | 403 | 483 | 8.50E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 34.980 |
| SRR2545915 | Juvenile tuber | 33.110 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 23.930 |
| SRR5643514 | five period of Gastrodia elata | 20.830 | |
| SRR5643515 | five period of Gastrodia elata | 17.390 | |
| SRR5643524 | five period of Gastrodia elata | 21.480 | |
| SRR5643525 | five period of Gastrodia elata | 48.870 | |
| SRR5643528 | five period of Gastrodia elata | 40.860 | |
| SRR5643658 | five period of Gastrodia elata | 49.650 | |
| SRR5643659 | five period of Gastrodia elata | 18.880 | |
| SRR5643660 | five period of Gastrodia elata | 16.840 | |
| SRR5643661 | five period of Gastrodia elata | 16.560 | |
| SRR5643662 | five period of Gastrodia elata | 18.180 | |
| SRR5643663 | five period of Gastrodia elata | 21.760 | |
| SRR5643664 | five period of Gastrodia elata | 21.890 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 21.540 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.500 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 18.080 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 31.730 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 30.190 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 36.170 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 25.490 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 29.100 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 20.030 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 17.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.210 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.210 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 35.86 |
| Juven | Juvenile tuber | 37.11 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 61.70 | |
| Mother_Juven | Mother tuber of Juvenile | 69.87 |