Gene detail

Detail information of GWHGAAEX016210/evm.TU.scaffold_73.136

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0152	8.00E-66	Spliceosomal protein FBP11/Splicing factor PRP40
nr	gi\|743757810\|ref\|XP_010923718.1\|	5.59E-176	PREDICTED: uncharacterized protein LOC105046722 isoform X2 [Elaeis guineensis]
trEMBL	tr\|I1NUN1\|I1NUN1_ORYGL	1.00E-155	Uncharacterized protein {ECO:0000313\|EnsemblPlants:ORGLA01G0357100.1}
TAIR	AT2G41020	8.00E-66	WW domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000076	3139976	3183627	+

Transcript Sequence
>GWHTAAEX016210 CCGAGATCTCTGATAGGGTACTTCGCGCGAACACCTGGCTCGCCTAGATCGCTTCCGCCATCGCTGCCGCACACGGTTGCCTCGTTCCGTCCGGCCTACCTTCCGCTTTCGCAGAGGCTCGCCCGACTCCCTCTCGACTCTTCCAAGCCGCAGCCGCTCGTCTGACATCAGGTGGCTGCTCGTCTCACATTAGTTCAGATACATTTTATGGATTATCTGTTGGATGATTTGGCTTGTCTCGATTATTAATTCAATTTCTGATTATTTCAAGCACTCTTATGCAAGGAGTACAGCATAGATGAATAATGGATGAATTTTCAGAACCACCACCACCTCCCGGCACAAATTTGCTGCCAGCTACATCCTATTCTGCCAATCCAAATGCACCTTTCCCCTTTCCACATGCATCTTTCAGCAGTACCACGCATGCAAATTTCCCAAAAGTTCCTGAAATCCTTTTTCCTGTAAATCCTTCCAATGGATTTTCACCTTCTATTCATAACTTTTATCCCCACTTTCAGACCCCATTTTCTCAGGGCGTTGCTTTACAACACTCCTATTCTTTTGCAAGCAACATTGAAACTCAACCTAGAAATTCACAGATCACGGATATGAACCAAACTGGCAATGGTATATCTAATTCATTCAGTCAATTAAGTGCTGCCTCACTATTGAACACTTGGTTGCCTGGTACAGAATCTAGACCATCAAATGCTTGTTTAACTAGTTCAGTTAAAGCAGTCAAGCATCATAATCCATCCGATATGATGAAATCAATTTTGTCTGCTGAAAACAGTATTGATCTGCATACAGTGACCCAAGTTGCAGTTGATAAGGCGGTAATTGAACAAATAGGTGATTCGTCTGCGAATAAATACTCCAGCTTGTGTACTAGAGATTCTAGTGACATTGAATCTGCAGCCCAAGTTGTTGTACTTCGTGAGCAAGAAATAACAGCAAAGCAAGTCATACAGAATCAAAGATTAGCTAATGAAAAAAATGGGACTGCAGAAGATTGTCAAGATGTTCTTTCTGGACGGCATGATCCCAATGCACTGAAGGAACATTTATTGAAGATGACTAGTCAACATCGTGCAGAAATGTCAAGCAAGCGAGGGAAATTTGTTCACCATGAGAATGATAATGTTGAGATTGGAAACGGTTACGGTGTACCTGGTGGTGGTGCTTATTATGCTTCAAGAACCTTAGGTGTTAAAACTAGAGTTGAAAATCAAGAATTAAACTTGGTAGCTTCAAAGGATGCTAAAAAAGAGTTACCTGAGTATCTTAAGCAGAGACTTAAAGCAAGGGGTATTCTTAGAGATGAAATGGCAAATGATGAGACAATTACAGTTGAGAAGAAATTTGAAACTTGGCCTGCTGATAGGAAATTTGTGCTGACATTGCCTCCTGGTTGGGCCGAGGCCAAAGACCCAGAAACTGGTTCCTCTTATTTTTATAATGAGAAAACTGGAGAAAGCCAATGGGAATATCCTATTGAATGTACTAGCTCTATACAACGTACAGCTTGTTCAACTCTGCCTCAAGATTGGGAGGAGGCATTGGATGAATCAACAGCACTAGCCAACACTAGCCGGTTCCGTCCACCAGCCAAGCAGCAACTGCAGCATTTGTTCTCCACAGCAGCAAGTGGTGCTCGTCCACCAGGCCAAAGATATTATTACAATAAAAGTACAAATGCTACACAGTGGGAGAGGCCATGTTCAGTACATGAGGTTATTCCACAGCATGCTGATGGCATCGCTGCTGGAAATAAACCTTCCGGAACTTGTGATACAGCTCAAAGTTATGTAAGATGCATGGGGTGTAATGGCTGGGGGCTTGACCTAGTTAAGGCCTGGGGTTATTGCAATCACTGCACAAGGGTTCTAAATCTTCCTAATCAACAGTATCCTAATTCAAATATGAAATATTTGGAGCACAGTAATAGCACTGCAGTGTCCGCAAAAGTTGATTCCAAGCAACGGACAAGTTCAAAACCACCATTTGGGAAAGGTAGCAAAAAAGATTTTAGAAAACGGTGCAGGGAAGATGAGGAGTTGGATCCCATGGATCCTAGCTCTTATTCCGATGCTCCACGTGGTGGCTGGGTTGTTGGTCTAAAAGGAGTGCAACCGCGTGCGGCAGACACCACTGCAACTGGGCCACTCTTTCAGCAGCGGCCATACCCATCACCCGGTGCCGTCCTCCGCAAGAATGCCGAGATCGCTTCTCAGAGCAGGAAGCATGGCACACACACCCGGTTGGCTCCCATTTCTAAGAGAGGAGATGGAAGCGACGGCCTCGGAGATGCGGACTGACACAGAAAATGGCACAGATCTGTGGATTGATCCAGTTAGCTTTCTTTCTTTATATATATATATATAT

Network for GWHGAAEX016210

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00397.25	WW	367	397	7.50E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12865	PQBP1, NPW38	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	22.710
SRP064423	SRR2545915	Juvenile tuber	18.860
SRP108465	SRR5643513	five period of Gastrodia elata	16.970
	SRR5643514	five period of Gastrodia elata	14.750
	SRR5643515	five period of Gastrodia elata	14.530
	SRR5643524	five period of Gastrodia elata	15.910
	SRR5643525	five period of Gastrodia elata	16.420
	SRR5643528	five period of Gastrodia elata	15.090
	SRR5643658	five period of Gastrodia elata	16.290
	SRR5643659	five period of Gastrodia elata	19.550
	SRR5643660	five period of Gastrodia elata	21.620
	SRR5643661	five period of Gastrodia elata	19.080
	SRR5643662	five period of Gastrodia elata	18.460
	SRR5643663	five period of Gastrodia elata	18.230
	SRR5643664	five period of Gastrodia elata	21.540
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	22.920
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	15.210
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	20.170
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	29.470
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	28.450
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	40.030
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	26.460
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	30.070
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	22.200
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	26.630
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	19.230
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	19.230
SRP279888	Gastro	Gastrodia elata tuber	29.61
	Juven	Juvenile tuber	24.71
	Mother_Gastro	Mother tuber of Gastrodia elata	28.94
	Mother_Juven	Mother tuber of Juvenile	28.36