Detail information of GWHGAAEX016214/evm.TU.scaffold_73.141


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG19900Poly(A)-specific exoribonuclease PARN
nrgi|672128332|ref|XP_008787651.1|0PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Phoenix dactylifera]
Swissprottr|Q6YYA3|CRS1_ORYSJ1.00E-133Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic (Precursor)
trEMBLtr|K3Z3Z7|K3Z3Z7_SETIT0Uncharacterized protein {ECO:0000313|EnsemblPlants:Si021265m}
TAIRAT3G183900CRS1 / YhbY (CRM) domain-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007632737553314501+
Transcript Sequence

Network for GWHGAAEX016214

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01985.20CRS1_YhbY2082913.60E-23
PF01985.20CRS1_YhbY4165009.10E-15
PF01985.20CRS1_YhbY6297154.10E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003723Molecular FunctionRNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms18.060
SRR2545915Juvenile tuber15.340
SRP108465SRR5643513five period of Gastrodia elata16.310
SRR5643514five period of Gastrodia elata17.320
SRR5643515five period of Gastrodia elata13.140
SRR5643524five period of Gastrodia elata15.590
SRR5643525five period of Gastrodia elata13.540
SRR5643528five period of Gastrodia elata12.690
SRR5643658five period of Gastrodia elata12.050
SRR5643659five period of Gastrodia elata12.440
SRR5643660five period of Gastrodia elata12.860
SRR5643661five period of Gastrodia elata12.600
SRR5643662five period of Gastrodia elata14.250
SRR5643663five period of Gastrodia elata12.830
SRR5643664five period of Gastrodia elata13.550
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.040
SRR6049655Rhizomagastrodiae_C368-T10_good_114.960
SRR6049656Rhizomagastrodiae_C368-T07_good_117.490
SRR6049657Rhizomagastrodiae_C368-T07_good_122.970
SRR6049658Rhizomagastrodiae_C368-T04_good_125.680
SRR6049659Rhizomagastrodiae_C368-T04_good_131.370
SRR6049660Rhizomagastrodiae_C368-T01_good_122.730
SRR6049661Rhizomagastrodiae_C368-T04_good_126.550
SRR6049662Rhizomagastrodiae_C368-T01_good_120.890
SRR6049663Rhizomagastrodiae_C368-T01_good_121.280
SRR6049664Rhizomagastrodiae_C368-T10_good_116.090
SRR6049665Rhizomagastrodiae_C368-T10_good_116.090
SRP279888GastroGastrodia elata tuber 18.09
JuvenJuvenile tuber27.69
Mother_GastroMother tuber of Gastrodia elata 15.33
Mother_JuvenMother tuber of Juvenile 24.62