Detail information of GWHGAAEX016218/evm.TU.scaffold_73.147
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|375008290|ref|YP_004981923.1| | 1.00E-28 | tRNA dimethylallyltransferase [Geobacillus thermoleovorans CCB_US3_UF5] |
| KOG | KOG1384 | 3.00E-81 | tRNA delta(2)-isopentenylpyrophosphate transferase |
| nr | gi|694998927|ref|XP_009406689.1| | 3.61E-109 | PREDICTED: adenylate isopentenyltransferase-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q94ID3|IPT1_ARATH | 1.00E-81 | Adenylate isopentenyltransferase 1, chloroplastic (Precursor) |
| trEMBL | tr|M0S2B9|M0S2B9_MUSAM | 1.00E-95 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P23110_001} |
| TAIR | AT1G68460 | 3.00E-81 | isopentenyltransferase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000076 | 3370358 | 3371782 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016218
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01715.16 | IPPT | 76 | 151 | 6.60E-17 |
| PF01715.16 | IPPT | 173 | 262 | 5.60E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10760 | IPT | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Zeatin biosynthesis | map00908 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008033 | Biological Process | tRNA processing |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.390 |
| SRR2545915 | Juvenile tuber | 0.440 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.150 |
| SRR5643514 | five period of Gastrodia elata | 3.610 | |
| SRR5643515 | five period of Gastrodia elata | 2.980 | |
| SRR5643524 | five period of Gastrodia elata | 4.680 | |
| SRR5643525 | five period of Gastrodia elata | 0.280 | |
| SRR5643528 | five period of Gastrodia elata | 0.470 | |
| SRR5643658 | five period of Gastrodia elata | 0.310 | |
| SRR5643659 | five period of Gastrodia elata | 1.760 | |
| SRR5643660 | five period of Gastrodia elata | 3.630 | |
| SRR5643661 | five period of Gastrodia elata | 1.900 | |
| SRR5643662 | five period of Gastrodia elata | 1.870 | |
| SRR5643663 | five period of Gastrodia elata | 1.030 | |
| SRR5643664 | five period of Gastrodia elata | 2.170 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.060 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.120 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.080 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.230 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.040 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.410 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.140 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.830 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.030 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.330 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.890 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.890 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.90 |
| Juven | Juvenile tuber | 3.68 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.05 | |
| Mother_Juven | Mother tuber of Juvenile | 4.59 |