Detail information of GWHGAAEX016224/evm.TU.scaffold_73.156


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|307594652|ref|YP_003900969.1|7.00E-134MCM family protein [Vulcanisaeta distributa DSM 14429]
KOGKOG04780DNA replication licensing factor, MCM4 component
nrgi|695001608|ref|XP_009417078.1|0PREDICTED: DNA replication licensing factor MCM4 [Musa acuminata subsp. malaccensis]
Swissprottr|Q5JKB0|MCM4_ORYSJ0DNA replication licensing factor MCM4
trEMBLtr|M0S2Z8|M0S2Z8_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P25410_001}
TAIRAT2G164400Minichromosome maintenance (MCM2/3/5) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007635114873535913-
Transcript Sequence

Network for GWHGAAEX016224

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14551.5MCM_N1252233.70E-10
PF17207.2MCM_OB2313601.50E-38
PF00493.22MCM4217451.40E-132
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K02212MCM4, CDC54 DNA replication map03030
Cell cyclemap04110
Cell cycle - yeastmap04111
Meiosis - yeastmap04113

Gene Ontology

GO term OntologyName
GO:0006270Biological ProcessDNA replication initiation
GO:0006260Biological ProcessDNA replication
GO:0005524Molecular FunctionATP binding
GO:0003677Molecular FunctionDNA binding
GO:0003678Molecular FunctionDNA helicase activity
GO:0042555Cellular ComponentMCM complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms3.240
SRR2545915Juvenile tuber10.850
SRP108465SRR5643513five period of Gastrodia elata16.420
SRR5643514five period of Gastrodia elata17.080
SRR5643515five period of Gastrodia elata12.110
SRR5643524five period of Gastrodia elata13.650
SRR5643525five period of Gastrodia elata2.820
SRR5643528five period of Gastrodia elata3.200
SRR5643658five period of Gastrodia elata3.320
SRR5643659five period of Gastrodia elata11.250
SRR5643660five period of Gastrodia elata9.960
SRR5643661five period of Gastrodia elata14.140
SRR5643662five period of Gastrodia elata5.090
SRR5643663five period of Gastrodia elata9.570
SRR5643664five period of Gastrodia elata3.720
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_115.600
SRR6049655Rhizomagastrodiae_C368-T10_good_120.670
SRR6049656Rhizomagastrodiae_C368-T07_good_121.670
SRR6049657Rhizomagastrodiae_C368-T07_good_112.300
SRR6049658Rhizomagastrodiae_C368-T04_good_17.630
SRR6049659Rhizomagastrodiae_C368-T04_good_15.300
SRR6049660Rhizomagastrodiae_C368-T01_good_114.770
SRR6049661Rhizomagastrodiae_C368-T04_good_113.620
SRR6049662Rhizomagastrodiae_C368-T01_good_124.840
SRR6049663Rhizomagastrodiae_C368-T01_good_117.660
SRR6049664Rhizomagastrodiae_C368-T10_good_122.890
SRR6049665Rhizomagastrodiae_C368-T10_good_122.890
SRP279888GastroGastrodia elata tuber 5.24
JuvenJuvenile tuber16.17
Mother_GastroMother tuber of Gastrodia elata 3.35
Mother_JuvenMother tuber of Juvenile 4.22