Detail information of GWHGAAEX016240/evm.TU.scaffold_73.174
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0916 | 0 | 1,3-beta-glucan synthase/callose synthase catalytic subunit |
| nr | gi|672135092|ref|XP_008791208.1| | 0 | PREDICTED: callose synthase 7-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q9SHJ3|CALS7_ARATH | 0 | Callose synthase 7 |
| trEMBL | tr|W1NHC8|W1NHC8_AMBTC | 0 | Uncharacterized protein {ECO:0000313|EMBL:ERM94604.1} |
| TAIR | AT1G06490 | 0 | glucan synthase-like 7 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000076 | 3881587 | 3963354 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016240
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04652.15 | Vta1 | 48 | 173 | 5.30E-12 |
| PF14288.5 | FKS1_dom1 | 335 | 453 | 7.60E-40 |
| PF02364.14 | Glucan_synthase | 1042 | 1742 | 6.80E-243 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT48 |
| Carbohydrate-Active enzymes Family | GT48 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006075 | Biological Process | (1->3)-beta-D-glucan biosynthetic process |
| GO:0003843 | Molecular Function | 1,3-beta-D-glucan synthase activity |
| GO:0016020 | Cellular Component | membrane |
| GO:0000148 | Cellular Component | 1,3-beta-D-glucan synthase complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.840 |
| SRR2545915 | Juvenile tuber | 6.970 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.680 |
| SRR5643514 | five period of Gastrodia elata | 8.720 | |
| SRR5643515 | five period of Gastrodia elata | 6.880 | |
| SRR5643524 | five period of Gastrodia elata | 7.070 | |
| SRR5643525 | five period of Gastrodia elata | 12.550 | |
| SRR5643528 | five period of Gastrodia elata | 7.160 | |
| SRR5643658 | five period of Gastrodia elata | 9.970 | |
| SRR5643659 | five period of Gastrodia elata | 7.100 | |
| SRR5643660 | five period of Gastrodia elata | 8.030 | |
| SRR5643661 | five period of Gastrodia elata | 7.640 | |
| SRR5643662 | five period of Gastrodia elata | 7.340 | |
| SRR5643663 | five period of Gastrodia elata | 7.810 | |
| SRR5643664 | five period of Gastrodia elata | 9.520 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.590 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.670 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.090 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.600 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.400 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.010 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.910 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.820 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.240 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.040 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.310 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.310 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 11.13 |
| Juven | Juvenile tuber | 11.08 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.42 | |
| Mother_Juven | Mother tuber of Juvenile | 9.71 |