Gene detail

Detail information of GWHGAAEX016241/evm.TU.scaffold_73.175

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|189502744\|ref\|YP_001958461.1\|	4.00E-25	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
nr	gi\|672164441\|ref\|XP_008802097.1\|	0	PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Phoenix dactylifera]
Swissprot	tr\|Q9FLV4\|Y5248_ARATH	0	G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 (Precursor)
trEMBL	tr\|A0A061G2E1\|A0A061G2E1_THECC	0	Serine/threonine-protein kinase {ECO:0000256\|PIRNR:PIRNR000641}
TAIR	AT5G24080	0	Protein kinase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000076	3967702	3975371	+

Transcript Sequence
>GWHTAAEX016241 TTCCCGAACTTGATAGCTTATATTCTCACAAAAAATAAACTGACACCAGCCACCTTCCCGAGCTTTCTTATGCTCTAATTTAACAAAAATGGCGTCTTCTTCTTCTTCTTCCATTTTCTGCAAAGTATTGCTCATTCTGCTTACTCTGCTGAAGCTCTCTGCATCGTTAGCAGAAAGAATACCATTAGGTTCGGAGCTTTCAGCAAGAAGAAACCAATCATGGAAATCTGAGAATGGGACATTTGCTTTAGGGTTTGCTTCCTTGAGTTCAGATGATAAGTTTCTTCTTGCAATTTGGTATGATGGGCATTCAGGGGATCAGACTATAGTGTGGTCTCCTAACAGAGACTCACCGGTAGAAAGAGATGCGGTAGTAAAGCTGGACCAAGCGGGAAACATTCAGCTTCTCAATGGAAACGCACTGATCTGGACCTCAAACACGAGCGGTAATAATGTAGCATTCGGCTTCATGTCCGATTCGGGCAACTTCCTTCTCTGCATCGACGAAAATCAAACAGCGTGGGAGAGCTTCTGGCATCCATCAGACACTCTCCTTCCAGGCCAGTCTCTCTCTGCTTCACTTGAACTGACATCACCCAAGTCTCGATTTGGCTATTACTCCCTCAAAATGCTTCAGCAGCATACTTCACTTAGCCTTGCTTTAAATTACGTTCCATCATCCGAATCCCACTCCAACTTCTCCTACTGGTCCAGCCCTCAAATCTCCAATGCAACTGGAGAAGTCGTAGCCATGCTCGACAATTTTGGAAACTTCGCAATCATGTATGGAAAATCAGCAGCAGGCACAGTATACGTGCACAAGAATGATTCAAGTAATTCGTCTTCCCCTCGTCGGATCGTGATCGGGAATGACGGAAACTTGAATCTTTATGAGTGGAATAACAGCAACATATGGGTGAGTATATGGTCGGCGGTGTTGAATCCATGCCAAGTTGCCGGAATTTGTGGTAGTGGCATATGCATTTTGAATGGAACGAGCGACTTGGGAGAAGTGAACTGCAAGAATTTGCCACAGGTGCAGCCACTTTCAAAAGATTGCAGTGTAAAGAAGCAGATGGAGATGATAACTCAAACCAACTACTACTTTTCAGGAACTTCGACAATTGCAAATTTCAGTGGCCTGGCAACAAGTTCTGAGTGTGCTGATCACTGCCTGTCGAACTGTGACTGTGTTTCATCAGTTTATGGGATCGTCGACAATGAGGCTTACTGCTGGACTCTGAGCAGCATGTTATTTGGGGGTTTGCAGGATCCAGGTTCGACGCTTTACATCAAGGTTGGAATGAATCAAACATTAGATGAATCGGAGCAGACAGGATCACCAAGTTCATCAAACCATCACTATGAGATTGTGTTTCCACTGTTGTTCTGTTTTTTCGCTCTCATATTGTTACTGTGCTTGTTGCTGGGTTTCAACATCAAGAAGAGGAGGAAGCTGCAAGAGAGAATGATCTCCAGTTCTCTAAGCTTGCCTGGAACTCCTACATACTTCAGCTACCATGATCTCCAGATGGCAACTAGTAACTTCTCTAGCTTGTTGGGAACAGGGGGGTTTGGAAGCGTGTATAAAGGAAGTCTCAGAGATGGTACCCTGGTTGCTGTAAAGAAGCTTGAAAGGATGCTAGCTCATGGTGAAAAAGAGTTTGTAACTGAAGTAACTACGATAGGGTCCATGCATCACATGAACTTGGTCAACCTTTGTGGATTTTGCTCCGAGAGAACACACAGATTGCTTGTATACGAGTACATGAGCAACGGCTCATTAGACAAATGGATCTTTCCTTCAAATTCAAGAATTGTTAGCTCAAAGAATCAAGGCAGCAGAATCCTAGAATGGAAGATTCGTTTCCAGATAGCTATATCCATAGCACAGGGAATCTCATACTTCCACGAACAGTGTAAGAACAGGATCATTCACTGTGACATCAAGCCAGAGAACATACTCCTAGATGAGAATTTCTACCCAAAAGTGTCAGATTTCGGGTTGGCAAAGCTCATGAGCAGAGAGCATTCCCATGTAGTCACAATGGTTAGGGGTACAAGAGGGTATTTGGCGCCTGAGTGGGTCAGTAATCGCCCCATCACAGTGAAGGCTGATGTTTACAGCTATGGAGTTTTGCTACTTGAGATCATTGGGGGAAGGAGGAATCTTGATATGTCTCTTGATGCTGAAGAGTTTTACTATCCAGGATTTGCATACAAGGCAATGACGAACGGAACGGCAATCAAAGCAGCGGACAGGAGGCTAAAGGCGGAGAATGTGGATCAGGAAGAGCTTCTGAGAGCCATGCGGGCTGCATTTTGGTGCATTCAGGACGAGGCAACGGTGAGGCCGTCAATGGGGCAAGTTGTGAAGATGTTGGAAGGATCGGCGCCTATAAATGCGCCGCCGATGCCTCAATCCGTTCTGGAATTGGTGGAAGAAGGTCTCAGCACCGTGTATGATGCTATGAAAAGTGGTAACAACAATTTCTTAATGGGCGATGGAGAAGAGGAGGAGCTTTTGATCACTGCTGCTACTGCTGCTTCTTCGTCGGCCGTTCGGACAGGCGGGTCGCAGGCAAACTATAGCAACTCAACCATGTCGCCCTAGGAAAGAATAAGGATTAACAATGGCTGCCCGTTTAACGATGTTCTTTTTTGTTGTTGGGTCCAGTAATGGTGTGGAAAACCTCGATAATTTTAAGGGAAGGTGTAGATGGGTAGAACTGTAAAGTGTGATTATCGCACATTGTTTTTTTTTTCATATTTTAATCGCCAATTTGTGATATTTAATAAACTATAATTGATAGTTCTATGCACTTTTATTTTGAAGTTGTCATGGTACC

Network for GWHGAAEX016241

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01453.23	B_lectin	78	168	9.30E-19
PF00069.24	Pkinase	488	703	1.70E-48

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_SD-2b

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0004674	Molecular Function	protein serine/threonine kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	30.720
SRP064423	SRR2545915	Juvenile tuber	33.490
SRP108465	SRR5643513	five period of Gastrodia elata	6.180
	SRR5643514	five period of Gastrodia elata	3.680
	SRR5643515	five period of Gastrodia elata	5.540
	SRR5643524	five period of Gastrodia elata	4.860
	SRR5643525	five period of Gastrodia elata	44.610
	SRR5643528	five period of Gastrodia elata	26.570
	SRR5643658	five period of Gastrodia elata	133.420
	SRR5643659	five period of Gastrodia elata	1.420
	SRR5643660	five period of Gastrodia elata	2.970
	SRR5643661	five period of Gastrodia elata	1.400
	SRR5643662	five period of Gastrodia elata	2.910
	SRR5643663	five period of Gastrodia elata	1.640
	SRR5643664	five period of Gastrodia elata	2.560
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.860
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.870
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.060
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.210
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	11.610
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	14.430
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.610
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.300
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.670
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.630
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.770
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.770
SRP279888	Gastro	Gastrodia elata tuber	4.63
	Juven	Juvenile tuber	1.26
	Mother_Gastro	Mother tuber of Gastrodia elata	9.87
	Mother_Juven	Mother tuber of Juvenile	2.05