Detail information of GWHGAAEX016248/evm.TU.scaffold_73.183


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG26360Splicing factor 3a, subunit 3
nrgi|695080831|ref|XP_009387901.1|0PREDICTED: splicing factor 3A subunit 3 [Musa acuminata subsp. malaccensis]
trEMBLtr|M0UB95|M0UB95_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP21870_001}
TAIRAT5G061600splicing factor-related

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007641368824184456+
Transcript Sequence

Network for GWHGAAEX016248

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12108.7SF3a60_bindingd811058.20E-11
PF16837.4SF3A31272051.30E-23
PF13297.5Telomere_Sde2_22453037.90E-25
PF11931.7DUF34493295079.50E-76
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12827SF3A3, SAP61, PRP9 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms155.070
SRR2545915Juvenile tuber205.960
SRP108465SRR5643513five period of Gastrodia elata101.420
SRR5643514five period of Gastrodia elata85.950
SRR5643515five period of Gastrodia elata76.760
SRR5643524five period of Gastrodia elata78.500
SRR5643525five period of Gastrodia elata48.850
SRR5643528five period of Gastrodia elata40.750
SRR5643658five period of Gastrodia elata36.160
SRR5643659five period of Gastrodia elata141.570
SRR5643660five period of Gastrodia elata156.280
SRR5643661five period of Gastrodia elata163.630
SRR5643662five period of Gastrodia elata156.820
SRR5643663five period of Gastrodia elata149.340
SRR5643664five period of Gastrodia elata199.330
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_198.560
SRR6049655Rhizomagastrodiae_C368-T10_good_1132.190
SRR6049656Rhizomagastrodiae_C368-T07_good_182.680
SRR6049657Rhizomagastrodiae_C368-T07_good_1135.260
SRR6049658Rhizomagastrodiae_C368-T04_good_179.500
SRR6049659Rhizomagastrodiae_C368-T04_good_186.700
SRR6049660Rhizomagastrodiae_C368-T01_good_187.420
SRR6049661Rhizomagastrodiae_C368-T04_good_173.320
SRR6049662Rhizomagastrodiae_C368-T01_good_172.870
SRR6049663Rhizomagastrodiae_C368-T01_good_157.220
SRR6049664Rhizomagastrodiae_C368-T10_good_179.460
SRR6049665Rhizomagastrodiae_C368-T10_good_179.460
SRP279888GastroGastrodia elata tuber 166.41
JuvenJuvenile tuber208.83
Mother_GastroMother tuber of Gastrodia elata 81.97
Mother_JuvenMother tuber of Juvenile 154.61