Detail information of GWHGAAEX016250/evm.TU.scaffold_73.185


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743828284|ref|XP_010933821.1|0PREDICTED: VIN3-like protein 1 isoform X2 [Elaeis guineensis]
Swissprottr|Q9LHF5|VIL1_ARATH9.00E-158VIN3-like protein 1
trEMBLtr|M0SK81|M0SK81_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P01640_001}
TAIRAT3G244403.00E-157Fibronectin type III domain-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007642108614224877+
Transcript Sequence

Network for GWHGAAEX016250

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07227.10PHD_Oberon601789.80E-31
PF00041.20fn32623438.10E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms17.220
SRR2545915Juvenile tuber15.690
SRP108465SRR5643513five period of Gastrodia elata19.350
SRR5643514five period of Gastrodia elata25.410
SRR5643515five period of Gastrodia elata23.130
SRR5643524five period of Gastrodia elata23.170
SRR5643525five period of Gastrodia elata24.330
SRR5643528five period of Gastrodia elata25.790
SRR5643658five period of Gastrodia elata28.450
SRR5643659five period of Gastrodia elata23.830
SRR5643660five period of Gastrodia elata22.770
SRR5643661five period of Gastrodia elata23.960
SRR5643662five period of Gastrodia elata24.230
SRR5643663five period of Gastrodia elata24.030
SRR5643664five period of Gastrodia elata23.340
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_116.320
SRR6049655Rhizomagastrodiae_C368-T10_good_114.350
SRR6049656Rhizomagastrodiae_C368-T07_good_118.880
SRR6049657Rhizomagastrodiae_C368-T07_good_116.700
SRR6049658Rhizomagastrodiae_C368-T04_good_120.360
SRR6049659Rhizomagastrodiae_C368-T04_good_121.760
SRR6049660Rhizomagastrodiae_C368-T01_good_123.090
SRR6049661Rhizomagastrodiae_C368-T04_good_119.070
SRR6049662Rhizomagastrodiae_C368-T01_good_125.070
SRR6049663Rhizomagastrodiae_C368-T01_good_133.340
SRR6049664Rhizomagastrodiae_C368-T10_good_120.120
SRR6049665Rhizomagastrodiae_C368-T10_good_120.120
SRP279888GastroGastrodia elata tuber 23.45
JuvenJuvenile tuber16.40
Mother_GastroMother tuber of Gastrodia elata 30.07
Mother_JuvenMother tuber of Juvenile 22.18