Detail information of GWHGAAEX016252/evm.TU.scaffold_73.187
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0251 | 0 | Clathrin assembly protein AP180 and related proteins, contain ENTH domain |
| nr | gi|695018714|ref|XP_009396331.1| | 0 | PREDICTED: putative clathrin assembly protein At2g01600 isoform X1 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q8LBH2|CAP8_ARATH | 0 | Putative clathrin assembly protein At2g01600 |
| trEMBL | tr|M0U2E8|M0U2E8_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P21890_001} |
| TAIR | AT2G01600 | 0 | ENTH/ANTH/VHS superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000076 | 4235574 | 4245759 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016252
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07651.15 | ANTH | 31 | 309 | 2.20E-91 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0048268 | Biological Process | clathrin coat assembly |
| GO:0005545 | Molecular Function | 1-phosphatidylinositol binding |
| GO:0030276 | Molecular Function | clathrin binding |
| GO:0005543 | Molecular Function | phospholipid binding |
| GO:0030136 | Cellular Component | clathrin-coated vesicle |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 52.380 |
| SRR2545915 | Juvenile tuber | 52.050 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 68.000 |
| SRR5643514 | five period of Gastrodia elata | 54.240 | |
| SRR5643515 | five period of Gastrodia elata | 77.200 | |
| SRR5643524 | five period of Gastrodia elata | 56.890 | |
| SRR5643525 | five period of Gastrodia elata | 81.840 | |
| SRR5643528 | five period of Gastrodia elata | 75.690 | |
| SRR5643658 | five period of Gastrodia elata | 70.240 | |
| SRR5643659 | five period of Gastrodia elata | 87.090 | |
| SRR5643660 | five period of Gastrodia elata | 94.400 | |
| SRR5643661 | five period of Gastrodia elata | 106.070 | |
| SRR5643662 | five period of Gastrodia elata | 111.790 | |
| SRR5643663 | five period of Gastrodia elata | 99.280 | |
| SRR5643664 | five period of Gastrodia elata | 131.300 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 79.470 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 91.900 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 71.880 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 78.870 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 79.950 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 81.890 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 75.380 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 70.120 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 69.940 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 73.800 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 76.910 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 76.910 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 78.00 |
| Juven | Juvenile tuber | 82.23 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 66.99 | |
| Mother_Juven | Mother tuber of Juvenile | 102.85 |