Detail information of GWHGAAEX016264/evm.TU.scaffold_73.200
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1863 | 0 | Ubiquitin carboxyl-terminal hydrolase |
| nr | gi|672136393|ref|XP_008791893.1| | 0 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 [Phoenix dactylifera] |
| Swissprot | tr|A2XDG4|UBP26_ORYSI | 0 | Ubiquitin carboxyl-terminal hydrolase 26 |
| trEMBL | tr|M0RQB9|M0RQB9_MUSAM | 0 | Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435} |
| TAIR | AT3G49600_2 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000076 | 4606967 | 4700982 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016264
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00443.28 | UCH | 115 | 447 | 3.60E-42 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | USP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016579 | Biological Process | protein deubiquitination |
| GO:0006511 | Biological Process | ubiquitin-dependent protein catabolic process |
| GO:0004843 | Molecular Function | thiol-dependent ubiquitin-specific protease activity |
| GO:0036459 | Molecular Function | thiol-dependent ubiquitinyl hydrolase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.800 |
| SRR2545915 | Juvenile tuber | 9.890 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.960 |
| SRR5643514 | five period of Gastrodia elata | 13.540 | |
| SRR5643515 | five period of Gastrodia elata | 11.000 | |
| SRR5643524 | five period of Gastrodia elata | 12.740 | |
| SRR5643525 | five period of Gastrodia elata | 6.180 | |
| SRR5643528 | five period of Gastrodia elata | 5.880 | |
| SRR5643658 | five period of Gastrodia elata | 6.140 | |
| SRR5643659 | five period of Gastrodia elata | 5.650 | |
| SRR5643660 | five period of Gastrodia elata | 6.280 | |
| SRR5643661 | five period of Gastrodia elata | 5.780 | |
| SRR5643662 | five period of Gastrodia elata | 4.290 | |
| SRR5643663 | five period of Gastrodia elata | 5.110 | |
| SRR5643664 | five period of Gastrodia elata | 4.200 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.430 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.360 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.990 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.840 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.420 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 12.520 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.070 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.360 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.590 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.380 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 19.410 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 19.410 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.75 |
| Juven | Juvenile tuber | 8.59 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 13.74 | |
| Mother_Juven | Mother tuber of Juvenile | 19.04 |