Detail information of GWHGAAEX016265/evm.TU.scaffold_73.201
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|182415146|ref|YP_001820212.1| | 2.00E-30 | galacturan 1,4-alpha-galacturonidase [Opitutus terrae PB90-1] |
| nr | gi|672183189|ref|XP_008811864.1| | 0 | PREDICTED: probable polygalacturonase At1g80170 [Phoenix dactylifera] |
| Swissprot | tr|Q94AJ5|PGLR5_ARATH | 1.00E-163 | Probable polygalacturonase At1g80170 (Precursor) |
| trEMBL | tr|M0SED4|M0SED4_MUSAM | 2.00E-178 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P13670_001} |
| TAIR | AT1G80170 | 3.00E-159 | Pectin lyase-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000076 | 4702048 | 4707893 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016265
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00295.16 | Glyco_hydro_28 | 91 | 418 | 1.10E-92 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01213 | E3.2.1.67 | Metabolic pathways | map01100 |
| Pentose and glucuronate interconversions | map00040 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004650 | Molecular Function | polygalacturonase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.460 |
| SRR2545915 | Juvenile tuber | 3.570 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.260 |
| SRR5643514 | five period of Gastrodia elata | 6.200 | |
| SRR5643515 | five period of Gastrodia elata | 6.880 | |
| SRR5643524 | five period of Gastrodia elata | 5.430 | |
| SRR5643525 | five period of Gastrodia elata | 2.720 | |
| SRR5643528 | five period of Gastrodia elata | 4.190 | |
| SRR5643658 | five period of Gastrodia elata | 3.930 | |
| SRR5643659 | five period of Gastrodia elata | 2.640 | |
| SRR5643660 | five period of Gastrodia elata | 3.270 | |
| SRR5643661 | five period of Gastrodia elata | 3.290 | |
| SRR5643662 | five period of Gastrodia elata | 2.360 | |
| SRR5643663 | five period of Gastrodia elata | 2.830 | |
| SRR5643664 | five period of Gastrodia elata | 2.520 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.020 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.160 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.980 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.270 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.040 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 15.110 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.760 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.310 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.760 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.930 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.490 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.490 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.76 |
| Juven | Juvenile tuber | 4.57 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.90 | |
| Mother_Juven | Mother tuber of Juvenile | 3.30 |