Detail information of GWHGAAEX016273/evm.TU.scaffold_74.8
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1987 | 1.00E-19 | Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains |
| nr | gi|743763078|ref|XP_010911166.1| | 1.89E-97 | PREDICTED: BTB/POZ domain-containing protein At4g08455 [Elaeis guineensis] |
| Swissprot | tr|Q6DBN1|Y4845_ARATH | 4.00E-92 | BTB/POZ domain-containing protein At4g08455 |
| trEMBL | tr|M0TVK9|M0TVK9_MUSAM | 2.00E-96 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P32570_001} |
| TAIR | HS4507183 | 1.00E-19 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000070 | 486099 | 496488 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016273
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00651.30 | BTB | 90 | 172 | 9.80E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TRAF |
| Ubiquitin Family | BTB |
| Ubiquitin Family | 3-box |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10523 | SPOP | Hedgehog signaling pathway | map04340 |
| Hedgehog signaling pathway - fly | map04341 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.850 |
| SRR2545915 | Juvenile tuber | 6.080 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 14.020 |
| SRR5643514 | five period of Gastrodia elata | 14.050 | |
| SRR5643515 | five period of Gastrodia elata | 13.520 | |
| SRR5643524 | five period of Gastrodia elata | 12.320 | |
| SRR5643525 | five period of Gastrodia elata | 20.310 | |
| SRR5643528 | five period of Gastrodia elata | 15.190 | |
| SRR5643658 | five period of Gastrodia elata | 21.130 | |
| SRR5643659 | five period of Gastrodia elata | 19.360 | |
| SRR5643660 | five period of Gastrodia elata | 18.140 | |
| SRR5643661 | five period of Gastrodia elata | 17.810 | |
| SRR5643662 | five period of Gastrodia elata | 16.950 | |
| SRR5643663 | five period of Gastrodia elata | 15.780 | |
| SRR5643664 | five period of Gastrodia elata | 16.790 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.040 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.020 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.390 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.970 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.670 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.510 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.660 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.330 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.190 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.230 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.340 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.340 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 11.85 |
| Juven | Juvenile tuber | 14.76 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.14 | |
| Mother_Juven | Mother tuber of Juvenile | 9.81 |