Detail information of GWHGAAEX016274/evm.TU.scaffold_74.9


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|512550830|ref|YP_008088736.1|1.00E-132isocitrate dehydrogenase, NAD-dependent,mitochondrial type [Chthonomonas calidirosea T49]
KOGKOG07850Isocitrate dehydrogenase, alpha subunit
nrgi|720012899|ref|XP_010260005.1|0PREDICTED: isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [Nelumbo nucifera]
Swissprottr|Q945K7|IDH5_ARATH0Isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial (Precursor)
trEMBLtr|M0UAU8|M0UAU8_MUSAM0Isocitrate dehydrogenase [NAD] subunit, mitochondrial {ECO:0000256|RuleBase:RU361266}
TAIRAT5G032900isocitrate dehydrogenase V

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000070508840525160-
Transcript Sequence

Network for GWHGAAEX016274

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00180.19Iso_dh443676.70E-108
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00030IDH3 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Citrate cycle (TCA cycle)map00020

Gene Ontology

GO term OntologyName
GO:0055114Biological Processoxidation-reduction process
GO:0006099Biological Processtricarboxylic acid cycle
GO:0000287Molecular Functionmagnesium ion binding
GO:0004449Molecular Functionisocitrate dehydrogenase (NAD+) activity
GO:0016616Molecular Functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0051287Molecular FunctionNAD binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms35.610
SRR2545915Juvenile tuber42.510
SRP108465SRR5643513five period of Gastrodia elata54.080
SRR5643514five period of Gastrodia elata61.820
SRR5643515five period of Gastrodia elata52.060
SRR5643524five period of Gastrodia elata60.180
SRR5643525five period of Gastrodia elata53.700
SRR5643528five period of Gastrodia elata80.950
SRR5643658five period of Gastrodia elata53.090
SRR5643659five period of Gastrodia elata51.550
SRR5643660five period of Gastrodia elata55.980
SRR5643661five period of Gastrodia elata58.070
SRR5643662five period of Gastrodia elata52.800
SRR5643663five period of Gastrodia elata52.710
SRR5643664five period of Gastrodia elata46.750
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_158.150
SRR6049655Rhizomagastrodiae_C368-T10_good_179.370
SRR6049656Rhizomagastrodiae_C368-T07_good_171.900
SRR6049657Rhizomagastrodiae_C368-T07_good_153.450
SRR6049658Rhizomagastrodiae_C368-T04_good_161.580
SRR6049659Rhizomagastrodiae_C368-T04_good_160.620
SRR6049660Rhizomagastrodiae_C368-T01_good_154.530
SRR6049661Rhizomagastrodiae_C368-T04_good_156.290
SRR6049662Rhizomagastrodiae_C368-T01_good_191.820
SRR6049663Rhizomagastrodiae_C368-T01_good_172.760
SRR6049664Rhizomagastrodiae_C368-T10_good_196.980
SRR6049665Rhizomagastrodiae_C368-T10_good_196.980
SRP279888GastroGastrodia elata tuber 56.71
JuvenJuvenile tuber56.11
Mother_GastroMother tuber of Gastrodia elata 65.55
Mother_JuvenMother tuber of Juvenile 73.80