Detail information of GWHGAAEX016282/evm.TU.scaffold_74.22
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|220919241|ref|YP_002494545.1| | 4.00E-39 | amino acid/peptide transporter [Anaeromyxobacter dehalogenans 2CP-1] |
| KOG | KOG1237 | 0 | H+/oligopeptide symporter |
| nr | gi|695055211|ref|XP_009415773.1| | 0 | PREDICTED: uncharacterized protein LOC103996574 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q0WP01|PTR9_ARATH | 0 | Protein NRT1/ PTR FAMILY 5.10 |
| trEMBL | tr|M1D3I7|M1D3I7_SOLTU | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400080452} |
| TAIR | AT1G22540 | 0 | Major facilitator superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000070 | 1306682 | 1309404 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016282
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00854.20 | PTR2 | 106 | 510 | 2.90E-89 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0006857 | Biological Process | oligopeptide transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.100 |
| SRR2545915 | Juvenile tuber | 5.150 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 18.370 |
| SRR5643514 | five period of Gastrodia elata | 17.080 | |
| SRR5643515 | five period of Gastrodia elata | 8.390 | |
| SRR5643524 | five period of Gastrodia elata | 12.520 | |
| SRR5643525 | five period of Gastrodia elata | 17.090 | |
| SRR5643528 | five period of Gastrodia elata | 12.040 | |
| SRR5643658 | five period of Gastrodia elata | 13.080 | |
| SRR5643659 | five period of Gastrodia elata | 9.000 | |
| SRR5643660 | five period of Gastrodia elata | 6.680 | |
| SRR5643661 | five period of Gastrodia elata | 9.570 | |
| SRR5643662 | five period of Gastrodia elata | 8.230 | |
| SRR5643663 | five period of Gastrodia elata | 14.030 | |
| SRR5643664 | five period of Gastrodia elata | 6.320 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.250 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.480 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.090 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.890 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.390 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.140 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 14.190 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.390 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 22.020 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 22.890 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.730 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.730 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.59 |
| Juven | Juvenile tuber | 20.74 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.21 | |
| Mother_Juven | Mother tuber of Juvenile | 9.72 |