Detail information of GWHGAAEX016286/evm.TU.scaffold_74.28


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG28074.00E-109RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1
nrgi|700257731|gb|AIU50472.1|2.57E-132GTF2H2, partial [Iris japonica]
trEMBLtr|A0A097PR14|A0A097PR14_9ASPA1.00E-132GTF2H2 {ECO:0000313|EMBL:AIU50472.1} (Fragment)
TAIRAT1G050504.00E-109Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007017123101728566-
Transcript Sequence

Network for GWHGAAEX016286

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04056.13Ssl1922162.80E-47
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03142TFIIH2, GTF2H2, SSL1 Basal transcription factors map03022
Nucleotide excision repairmap03420

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms9.750
SRR2545915Juvenile tuber9.680
SRP108465SRR5643513five period of Gastrodia elata9.640
SRR5643514five period of Gastrodia elata7.840
SRR5643515five period of Gastrodia elata8.720
SRR5643524five period of Gastrodia elata7.450
SRR5643525five period of Gastrodia elata8.870
SRR5643528five period of Gastrodia elata8.450
SRR5643658five period of Gastrodia elata7.970
SRR5643659five period of Gastrodia elata12.870
SRR5643660five period of Gastrodia elata12.960
SRR5643661five period of Gastrodia elata12.620
SRR5643662five period of Gastrodia elata12.660
SRR5643663five period of Gastrodia elata11.020
SRR5643664five period of Gastrodia elata11.400
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_111.370
SRR6049655Rhizomagastrodiae_C368-T10_good_112.020
SRR6049656Rhizomagastrodiae_C368-T07_good_111.610
SRR6049657Rhizomagastrodiae_C368-T07_good_19.860
SRR6049658Rhizomagastrodiae_C368-T04_good_19.190
SRR6049659Rhizomagastrodiae_C368-T04_good_110.840
SRR6049660Rhizomagastrodiae_C368-T01_good_112.070
SRR6049661Rhizomagastrodiae_C368-T04_good_110.360
SRR6049662Rhizomagastrodiae_C368-T01_good_112.760
SRR6049663Rhizomagastrodiae_C368-T01_good_112.760
SRR6049664Rhizomagastrodiae_C368-T10_good_111.280
SRR6049665Rhizomagastrodiae_C368-T10_good_111.280
SRP279888GastroGastrodia elata tuber 7.71
JuvenJuvenile tuber9.19
Mother_GastroMother tuber of Gastrodia elata 6.36
Mother_JuvenMother tuber of Juvenile 6.47