Detail information of GWHGAAEX016287/evm.TU.scaffold_74.31


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|501435994|ref|YP_007984788.1|1.00E-16RNP-1 like RNA-binding protein [Candidatus Saccharimonas aalborgensis]
KOGKOG01184.00E-27FOG: RRM domain
nrgi|645276881|ref|XP_008243500.1|1.81E-34PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Prunus mume]
Swissprottr|Q9LIS2|RBG4_ARATH2.00E-21Glycine-rich RNA-binding protein 4, mitochondrial (Precursor)
trEMBLtr|M5VVB2|M5VVB2_PRUPE1.00E-34Uncharacterized protein {ECO:0000313|EMBL:EMJ05001.1}
TAIRAT5G062104.00E-27RNA binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007018210471832473+
Transcript Sequence

Network for GWHGAAEX016287

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module6

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_1481142.90E-20
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms99.940
SRR2545915Juvenile tuber68.990
SRP108465SRR5643513five period of Gastrodia elata23.730
SRR5643514five period of Gastrodia elata20.220
SRR5643515five period of Gastrodia elata22.940
SRR5643524five period of Gastrodia elata20.100
SRR5643525five period of Gastrodia elata30.400
SRR5643528five period of Gastrodia elata28.760
SRR5643658five period of Gastrodia elata42.460
SRR5643659five period of Gastrodia elata24.030
SRR5643660five period of Gastrodia elata33.010
SRR5643661five period of Gastrodia elata29.270
SRR5643662five period of Gastrodia elata36.960
SRR5643663five period of Gastrodia elata29.440
SRR5643664five period of Gastrodia elata42.280
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_145.910
SRR6049655Rhizomagastrodiae_C368-T10_good_115.130
SRR6049656Rhizomagastrodiae_C368-T07_good_134.000
SRR6049657Rhizomagastrodiae_C368-T07_good_147.340
SRR6049658Rhizomagastrodiae_C368-T04_good_140.430
SRR6049659Rhizomagastrodiae_C368-T04_good_158.690
SRR6049660Rhizomagastrodiae_C368-T01_good_144.490
SRR6049661Rhizomagastrodiae_C368-T04_good_133.980
SRR6049662Rhizomagastrodiae_C368-T01_good_133.810
SRR6049663Rhizomagastrodiae_C368-T01_good_130.110
SRR6049664Rhizomagastrodiae_C368-T10_good_140.350
SRR6049665Rhizomagastrodiae_C368-T10_good_140.350
SRP279888GastroGastrodia elata tuber 18.98
JuvenJuvenile tuber13.74
Mother_GastroMother tuber of Gastrodia elata 7.62
Mother_JuvenMother tuber of Juvenile 10.04