Detail information of GWHGAAEX016288/evm.TU.scaffold_74.32
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|159042310|ref|YP_001541562.1| | 9.00E-40 | 30S ribosomal protein S8 [Caldivirga maquilingensis IC-167] |
| KOG | KOG1754 | 2.00E-87 | 40S ribosomal protein S15/S22 |
| nr | gi|593783115|ref|XP_007154598.1| | 5.96E-88 | hypothetical protein PHAVU_003G132300g [Phaseolus vulgaris] |
| Swissprot | tr|Q9AT34|RS15A_DAUCA | 8.00E-89 | 40S ribosomal protein S15a |
| trEMBL | tr|M0RF45|M0RF45_MUSAM | 2.00E-88 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P03680_001} |
| TAIR | AT5G59850 | 2.00E-87 | Ribosomal protein S8 family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000070 | 1891148 | 1921015 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016288
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00410.18 | Ribosomal_S8 | 85 | 208 | 1.90E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02957 | RP-S15Ae, RPS15A | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 428.220 |
| SRR2545915 | Juvenile tuber | 657.520 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 507.010 |
| SRR5643514 | five period of Gastrodia elata | 519.030 | |
| SRR5643515 | five period of Gastrodia elata | 492.770 | |
| SRR5643524 | five period of Gastrodia elata | 506.040 | |
| SRR5643525 | five period of Gastrodia elata | 274.750 | |
| SRR5643528 | five period of Gastrodia elata | 311.360 | |
| SRR5643658 | five period of Gastrodia elata | 249.040 | |
| SRR5643659 | five period of Gastrodia elata | 670.800 | |
| SRR5643660 | five period of Gastrodia elata | 614.170 | |
| SRR5643661 | five period of Gastrodia elata | 794.790 | |
| SRR5643662 | five period of Gastrodia elata | 708.550 | |
| SRR5643663 | five period of Gastrodia elata | 735.120 | |
| SRR5643664 | five period of Gastrodia elata | 660.480 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 336.900 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 254.910 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 345.500 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 265.650 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 236.270 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 193.340 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 267.820 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 262.370 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 402.070 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 333.390 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 442.610 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 442.610 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 539.88 |
| Juven | Juvenile tuber | 281.26 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 134.91 | |
| Mother_Juven | Mother tuber of Juvenile | 148.28 |