Detail information of GWHGAAEX016297/evm.TU.scaffold_74.44
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|183221265|ref|YP_001839261.1| | 2.00E-11 | RNA binding protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] |
| KOG | KOG0119 | 8.00E-61 | Splicing factor 1/branch point binding protein (RRM superfamily) |
| nr | gi|672173418|ref|XP_008806841.1| | 4.44E-82 | PREDICTED: branchpoint-bridging protein-like [Phoenix dactylifera] |
| Swissprot | tr|Q8GWR3|QKIL5_ARATH | 9.00E-20 | KH domain-containing protein At1g09660/At1g09670 |
| trEMBL | tr|A0A068U9K6|A0A068U9K6_COFCA | 8.00E-71 | Coffea canephora |
| TAIR | AT5G51300 | 8.00E-61 | splicing factor-related |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000070 | 2658129 | 2660786 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016297
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00013.28 | KH_1 | 343 | 408 | 1.50E-06 |
| PF00076.21 | RRM_1 | 507 | 576 | 2.20E-19 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0003723 | Molecular Function | RNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 34.610 |
| SRR2545915 | Juvenile tuber | 26.770 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 27.020 |
| SRR5643514 | five period of Gastrodia elata | 33.640 | |
| SRR5643515 | five period of Gastrodia elata | 29.330 | |
| SRR5643524 | five period of Gastrodia elata | 33.300 | |
| SRR5643525 | five period of Gastrodia elata | 37.410 | |
| SRR5643528 | five period of Gastrodia elata | 37.030 | |
| SRR5643658 | five period of Gastrodia elata | 41.540 | |
| SRR5643659 | five period of Gastrodia elata | 25.660 | |
| SRR5643660 | five period of Gastrodia elata | 27.420 | |
| SRR5643661 | five period of Gastrodia elata | 24.170 | |
| SRR5643662 | five period of Gastrodia elata | 26.980 | |
| SRR5643663 | five period of Gastrodia elata | 27.370 | |
| SRR5643664 | five period of Gastrodia elata | 23.530 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 30.960 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 41.030 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 31.650 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 33.910 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 32.360 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 35.980 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 28.300 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 31.570 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 30.890 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 31.450 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 31.030 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 31.030 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 27.96 |
| Juven | Juvenile tuber | 24.48 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 27.49 | |
| Mother_Juven | Mother tuber of Juvenile | 22.95 |