Gene detail

Detail information of GWHGAAEX016298/evm.TU.scaffold_74.45

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743780892\|ref\|XP_010920653.1\|	PREDICTED: uncharacterized protein LOC105044449 [Elaeis guineensis]
trEMBL	tr\|M0TLV8\|M0TLV8_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P02060_001}
TAIR	AT3G12590	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000070	2710221	2746053	-

Transcript Sequence
>GWHTAAEX016298 ATGTCCGTTGATGAGCAGCCGGAGAGCTCGAAAAGTGCCCTAAGCTGTAGCCGATCGAAGAGTCCGGCAAGCATGAGGTTTTATGGCGAGCTGTCGCAGAAGCATAGGAAGCCCTCGGTGATGTCCAAGAAGCCGCCGGAGCCTCTGCGGCGAGCTGTGGCGGATTGCCTCTCTTCTACTACCGTCAATAGCCTTCAGGGCAATCCGTCCTTGCTATCATCCGAAGCCTCGAAGAATCTTCGGGATTACCTGGCTAACCCTGCAACTGTTGATATGGCTTACAATGTACTCTTAGAGCATGCACTTGCTGAGAGGGATCGAAGCCCAGCTGTAGTTCCGCGCTGCATCACATTGCTAAAACGCTATCTTATTCGATATGTGCCAAAGGCACAAATGTTACGGCTGATTGATCGTTTTTGTGATAATTGTATCATTGAGTATGAATCTCTTACAAAGCAGCGAGCATCATCATGGTCTATGTCATTAAGTCAAACTTCTAGGACAACAACAAATGTTATACCCTCGATGCTGTCTGCTTCCAGTTTTGCTTCACTTGTAAAATCCTTGAATTATGTGCGTTCCTTGGTGGCACAACAACTTCCTAAACTGTCATTTCAGCCACTAGGACCGTCTGGATCTTCAACATTTGGGAAACAACCACTTCCATCACTGTCATCATTTTTGACTAAATCTCGTATATCCCATCTAAATGCTGAAGTTATTACTGGCTCGAATTCTCTTCAATGGAAGGAAAGTTCATCACAGTCCTTAACAAAAGTATCAATCTATAATAGGCTTGATATTAGTAATAGTGACAAATACTTTTACTCAGACCTCCTTTCATTTCGAATGCGTGGAGATGGGGAACACCCATTACTTTGCTTGGTGACTGAAAGTCCCTTAAAGTCCTATGAATTCCACTCAAATTGGTTTATAGAAGCTGGGGCTGCAGCTCTTCTTTTTGATAATGGGATAAAAATAAATGACAAGTTAATGAAATATCCTGTCACTCAGAATTTACCTTATGCTGATCAGCTGTTGAGTTCGTTTCCAACTGCGGAAGCTACAAAATTTAGTTCTGCTGATAGTCATCTTAAAGCAATATCTGCCTATAAGCGTATGAAAGGTGGACCTCGTCAAGTTTGGGAAAAGGTAACTACAAGTACATTCCATCCACGAGCACATCCTCTTTTTCAATACAGACATTATAGTGAGCAGCAACCCTTGCGGTTAAATCTTGCTGAAATTAGGGAAGTTATTACTGAAGCATGCTCAGAAATCTCATCAACAGCTGTTAATTTGACTATATCGTCTCCCCTGACTAAGCACAATGCACGGCCTATTGAAGAAGTTGCAGTCGGTGTCCTCGTAAAACTCATTATTGACATGTATGTGAGGGATTTTACATCTGCTGCTCCTCTTACTCTTTTAATGCTGGAGGATATGCTTATTTCTCAAGCAGTGTCTTCTAGGACCCGGGTTTTTGATTTAATTTTAAATCTTGGTGTTCATGCACATTTGTTGGAGCCTTTAGTCGATGAAGACATCCCTGCAATTGCAGAAGAAGAGGATTTTGAAGAGTGTTTTTTAAACAGTGAAGACCAAAGAGGGACTGTTAATGCTCGTGCTAGGATGCAGCAAAAAATTTATACGTCTCTTGAAAACTTTGAGTGGTGGCTTTTAGCCATTCTATTTGAGGTTCTTTATCTACTAGTTCAAAGAGAAGAAAGGGAAGAAATTGTATGGGCATCTGCTTTGAGCTGCTTATTTTACTTTGTTTGTGACAGAGGAAAAATATTGAGAAGCCGGTTGAATGGCCTCGATATACGGGTTATTAAGGCCCTTCTAGAAATTAGCAGAGAGCATTCTTGGGCAGAAGTAGTTCACAGCAAGCTTGTATGTATGCTGACAAACATGTTTTACCAGACTTTGGATGGATCTCGAGAAGTTCTAGCAGATGCTAACACATTACTTGTTGAACAATTTGATCTTCTTGGAGGGATTGATTTCATTTGTCTGGAGTACTCACAGGTCAAAACAAAGGAAGAAAAGAGAAATCTCTTCTTGGTCCTTTTTGATTTTGCATTGCAGCGGATAAACGAGGCATGCAGTGCTGGAGCTTCAGCTTATGCTTTTGATAAGGTTCAGCTTGTTTGCTCTATGCTTACTCTTGCAGATGCGCCTGAAGCCTTTTATATTGCTGTTAAGCATGGTGTGGAAGGTATTGGACAACTCTTAAAGAAATCCATCTCTGGACCTTTGACTAGATCATCAAGCCATGAGCATCTAGATCTGATCACAGACAATATCATCATAGAACTTGATGCCCTCATATCTGCTTTCACTCATCTAGAAAATGAATTCTCTTTTATGGTGCAATTGACGAAATCATACCAATCAAACTCTGTATTGAATGAACTTGGAGAAGCTGAAATTGGTCTGAGAACTAGGCTTTCTTGGGTAACATTACATTCTCTACTGCATTCAGACAGGGCTTCAAATCGTCATCATGGATATATATGGCTAATTGAACTACTAACCTTAGAAATTAGAAAGGCTAAAGGAAGGAGCATTTGCATAATTATTAAGAAACTTGTGCAGCAATTTGTAGTTGCTGGATGCCAGGATATTTCTTCTTCATCAGTCCCTTTGCCGATAGTTATCATGTGCGGCCTCTTGAAATCAAAACATAATTTTATCCGAAGGGGCTTTCTTATTGTTTTGGAGAGATTTTTGATGCACTGCAAAATGTTTTTCGATGAAGATGAGTTACAAAATACAATCTATGAAAACAACATTGCTGATCATGATGAAATGCGATTTCACAAAGCAAATGCTATTATCGATGTGTTGAGCTCCGCCTTAACACTGGTAGTTCAAATAAATGAGACCGACTATCTCAATATCTTGAAGATGTGCGATATGCTTTTTTCTCAACTTTGTGTGAGACTGCCTTGTTATTCTGCAACTGGAATAACTTGTGGGCATACAAAAAGTCTTGAAAATTCAGTTTGCCATACACGTGAGACTCACAGAAGTGTATTGAATTCTTTTTCATCACAAAGCTTATTAAATCCAGGAAAGATATATGTGGACAAACCTTCGGGATGCACCTGCTCCGGTCATGAATCCGCCATCAATCACGAAACTACGTCAATGGCTGCACTTGTCCTGCATGGGCAAGCTATTGTTCCCATGCAGCTGGTTGCCCGAGTTCCATCATCCCTCTTCTACTGGCCATTAATACAACTTGCTGGAGCAGCGACGGATGACATCGCTCTAGGCGTTGCTGTTGGCAGTGAGGGCCGGGCAAATCTTCCCGGCTCTACATCTGACATTCGTGCCGCCCTTCTCCTACTATTGATAGGCAAATGCTCAGCTGATTCTGCAGCATTCATGGAAGTTGAAGGTGAAGAGTTTTTCAGGGGACTGCTGGATGATACAGACTCCAGGGTTGCATATTATTCAGCAGCTTTTCTTCAAAAGAGAATGATGACCGAAGAACCTGAGAAGTACCAACGCATGCTTCAGTCTCTCATAATCAAGGCACAGCAGTGTAACAATGAAATGCTGCTGGAGAATCCTTACCTTCAAATACGTGGCATTCTCCAGCTGGTGAACGATCCTGTGGGGTAG

Network for GWHGAAEX016298

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX016298
MSVDEQPESSKSALSCSRSKSPASMRFYGELSQKHRKPSVMSKKPPEPLRRAVADCLSSTTVNSLQGNPSLLSSEASKNLRDYLANPATVDMAYNVLLEHALAERDRSPAVVPRCITLLKRYLIRYVPKAQMLRLIDRFCDNCIIEYESLTKQRASSWSMSLSQTSRTTTNVIPSMLSASSFASLVKSLNYVRSLVAQQLPKLSFQPLGPSGSSTFGKQPLPSLSSFLTKSRISHLNAEVITGSNSLQWKESSSQSLTKVSIYNRLDISNSDKYFYSDLLSFRMRGDGEHPLLCLVTESPLKSYEFHSNWFIEAGAAALLFDNGIKINDKLMKYPVTQNLPYADQLLSSFPTAEATKFSSADSHLKAISAYKRMKGGPRQVWEKVTTSTFHPRAHPLFQYRHYSEQQPLRLNLAEIREVITEACSEISSTAVNLTISSPLTKHNARPIEEVAVGVLVKLIIDMYVRDFTSAAPLTLLMLEDMLISQAVSSRTRVFDLILNLGVHAHLLEPLVDEDIPAIAEEEDFEECFLNSEDQRGTVNARARMQQKIYTSLENFEWWLLAILFEVLYLLVQREEREEIVWASALSCLFYFVCDRGKILRSRLNGLDIRVIKALLEISREHSWAEVVHSKLVCMLTNMFYQTLDGSREVLADANTLLVEQFDLLGGIDFICLEYSQVKTKEEKRNLFLVLFDFALQRINEACSAGASAYAFDKVQLVCSMLTLADAPEAFYIAVKHGVEGIGQLLKKSISGPLTRSSSHEHLDLITDNIIIELDALISAFTHLENEFSFMVQLTKSYQSNSVLNELGEAEIGLRTRLSWVTLHSLLHSDRASNRHHGYIWLIELLTLEIRKAKGRSICIIIKKLVQQFVVAGCQDISSSSVPLPIVIMCGLLKSKHNFIRRGFLIVLERFLMHCKMFFDEDELQNTIYENNIADHDEMRFHKANAIIDVLSSALTLVVQINETDYLNILKMCDMLFSQLCVRLPCYSATGITCGHTKSLENSVCHTRETHRSVLNSFSSQSLLNPGKIYVDKPSGCTCSGHESAINHETTSMAALVLHGQAIVPMQLVARVPSSLFYWPLIQLAGAATDDIALGVAVGSEGRANLPGSTSDIRAALLLLLIGKCSADSAAFMEVEGEEFFRGLLDDTDSRVAYYSAAFLQKRMMTEEPEKYQRMLQSLIIKAQQCNNEMLLENPYLQIRGILQLVNDPVG

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	13.580
SRP064423	SRR2545915	Juvenile tuber	11.910
SRP108465	SRR5643513	five period of Gastrodia elata	6.810
	SRR5643514	five period of Gastrodia elata	7.390
	SRR5643515	five period of Gastrodia elata	8.190
	SRR5643524	five period of Gastrodia elata	7.050
	SRR5643525	five period of Gastrodia elata	7.060
	SRR5643528	five period of Gastrodia elata	7.790
	SRR5643658	five period of Gastrodia elata	6.550
	SRR5643659	five period of Gastrodia elata	9.030
	SRR5643660	five period of Gastrodia elata	9.060
	SRR5643661	five period of Gastrodia elata	7.580
	SRR5643662	five period of Gastrodia elata	9.240
	SRR5643663	five period of Gastrodia elata	8.810
	SRR5643664	five period of Gastrodia elata	10.020
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.070
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.640
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.240
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.380
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.120
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	10.880
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.130
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.780
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.660
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.500
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.550
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.550
SRP279888	Gastro	Gastrodia elata tuber	10.72
	Juven	Juvenile tuber	12.12
	Mother_Gastro	Mother tuber of Gastrodia elata	8.21
	Mother_Juven	Mother tuber of Juvenile	12.55