Detail information of GWHGAAEX016306/evm.TU.scaffold_74.55
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|291300775|ref|YP_003512053.1| | 4.00E-27 | 2OG-Fe(II) oxygenase [Stackebrandtia nassauensis DSM 44728] |
| KOG | KOG2731 | 4.00E-91 | DNA alkylation damage repair protein |
| nr | gi|743788492|ref|XP_010922678.1| | 2.11E-109 | PREDICTED: alpha-ketoglutarate-dependent dioxygenase abh1-like [Elaeis guineensis] |
| Swissprot | tr|Q9SA98|ALKBH_ARATH | 5.00E-08 | Alpha-ketoglutarate-dependent dioxygenase alkB |
| trEMBL | tr|M5WUR8|M5WUR8_PRUPE | 2.00E-103 | Uncharacterized protein {ECO:0000313|EMBL:EMJ17434.1} |
| TAIR | AT3G14160 | 4.00E-91 | 2-oxoglutarate-dependent dioxygenase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000070 | 3168693 | 3207397 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016306
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13532.5 | 2OG-FeII_Oxy_2 | 120 | 333 | 8.20E-44 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 33.470 |
| SRR2545915 | Juvenile tuber | 25.340 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.160 |
| SRR5643514 | five period of Gastrodia elata | 9.410 | |
| SRR5643515 | five period of Gastrodia elata | 8.130 | |
| SRR5643524 | five period of Gastrodia elata | 10.450 | |
| SRR5643525 | five period of Gastrodia elata | 10.790 | |
| SRR5643528 | five period of Gastrodia elata | 9.270 | |
| SRR5643658 | five period of Gastrodia elata | 9.190 | |
| SRR5643659 | five period of Gastrodia elata | 13.520 | |
| SRR5643660 | five period of Gastrodia elata | 15.540 | |
| SRR5643661 | five period of Gastrodia elata | 13.090 | |
| SRR5643662 | five period of Gastrodia elata | 16.880 | |
| SRR5643663 | five period of Gastrodia elata | 16.410 | |
| SRR5643664 | five period of Gastrodia elata | 17.590 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.900 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.430 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.040 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.910 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.300 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.210 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.810 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.310 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.050 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.180 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.100 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.100 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 24.87 |
| Juven | Juvenile tuber | 14.29 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 14.20 | |
| Mother_Juven | Mother tuber of Juvenile | 14.15 |