Gene detail

Detail information of GWHGAAEX016320/evm.TU.scaffold_74.79

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4282	2.00E-41	Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain
nr	gi\|743842837\|ref\|XP_010937909.1\|	2.35E-60	PREDICTED: trihelix transcription factor ASIL2-like [Elaeis guineensis]
Swissprot	tr\|Q9LJG8\|ASIL2_ARATH	4.00E-32	Trihelix transcription factor ASIL2 {ECO:0000305}
trEMBL	tr\|K4C5Q5\|K4C5Q5_SOLLC	1.00E-53	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc06g051120.2.1}
TAIR	AT3G11100	2.00E-41	sequence-specific DNA binding transcription factors

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000070	4706855	4733036	+

Transcript Sequence
>GWHTAAEX016320 ATGTCGCTTGATCGTTCTTCCGCTTCCCCACCTCTTCCCCATCCCATCTTGTCCTCCATCACGCTTCTTCCGCAAGATTCCATGCATTTCCGGCACCGTGCGGCTGCGGCAGTCACCTCCGGCAGCGGAGTGCGGGAGGATTGCTGGAGCGAGGGAGCGACGGAGTCATTAGTGGATGCTTGGGGTGAACGTTTCATCAATCTCAGCCGCGGCAATCTCAGGCAGAAGGACTGGAAAGATGTCGCAGACTCTGTGAACGTCAGGCAAGACGCCATGGGGAAGCTGTCAAAGACCAGCGGCCAGTGTAAGAATCGAATCGATACCCTAAAAAAGCGGTACAAGATCGAGAAGTCGAAGCCGGGGCGTTCCACCTGGCCGTTCTTCTCCCGACTCGATCTTCTCGTCGGTGCTTCCCCTCAGAAGCCGTCTCCTGGGGTTAAGCTGAAGCAACGAAACCCTAGCTCAAGCCCTGCGACGGTAACGCCAAGTATGATAATTTCATCCTGGGGTTCGTCAAGGATGCGGACGAATTTGCCCGATGCTGCGCAGAGTTCTCGCGAAGGTAGCGCGGTTGCTTGCGGCGATTTCGATGGCGGAGAAGAGAAGAGAAAGGTTCCGTTGTTCGAAGCATTTGTTGATAGGAAAAGGCGGAAGACATGGACTGGATCTGGGTTTTTTTCTTCTAGGGGCGATGGAGGCGGTGGAGGGGATCATAGTGACTTTACAGAGCTTGCGAGGGCCGTTGAAAAGATTGGAGAGATTTACGAAAAGGTGGAGAGGTCAAAACTGCAGCAAACATTGGAGCTGGAGAGGCAGAGGATGGAGTTTGAAAAGGATCTTGAGATACAGAGGATGAAGGTATTCATGGAGCTGCAGCTTGAGCTCGAGAGAATGAATTGGCACGAGTATGAATCTGATTCTGTGTATGTGCTTCAGTTGTCCCCTTTGGTTTTTCTTCCAATTTCTTACCTCTTATGTTTTGGTGCAAAACAAGAACATAATAACGGCCAACTCTTGCCAACGATATCCGATTCACCGTTTCACCTACATGGCGAGATTGATCCCTGTTTTTTCTTTTATTTTTCTCTTTTATGCCTGCTGGCTTCAGTTTATTCTGATGGCAAGGATAAGCTTGTTAAGGAGATCTTTGTTCTCGGTTCGATTCTTGGTCACCGAAATGCTGCTGCTGCTTGGGCTACTGCTGCCTGGGCTGTTGCTGCTAGCTGCATGGTCTGGGTTGCCTATGCTGTTGTTGCCTATGTTATTGTTGCTTTGCTTTGGCTGGTGTTTCTTTGGCTGCTGCTTATTGGGCTGCTGCTGCTTGGGCTGTTGCTGCCAGCTATCTGGGCTGAAGTTGCCTCTGCTGCTGCTGCTTGTGTTGCTACTGCTTTGGTTTACACTTCAGCTAGTGTTGCTTTGGCTGCTGCTGCTTGGGCTACTGCTGCTTGGGTTGCTATTGCATAG

Network for GWHGAAEX016320

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13837.5	Myb_DNA-bind_4	46	132	1.30E-22

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.150
SRP064423	SRR2545915	Juvenile tuber	2.870
SRP108465	SRR5643513	five period of Gastrodia elata	6.370
	SRR5643514	five period of Gastrodia elata	5.100
	SRR5643515	five period of Gastrodia elata	5.050
	SRR5643524	five period of Gastrodia elata	5.520
	SRR5643525	five period of Gastrodia elata	5.850
	SRR5643528	five period of Gastrodia elata	7.510
	SRR5643658	five period of Gastrodia elata	4.800
	SRR5643659	five period of Gastrodia elata	6.640
	SRR5643660	five period of Gastrodia elata	6.380
	SRR5643661	five period of Gastrodia elata	6.490
	SRR5643662	five period of Gastrodia elata	7.530
	SRR5643663	five period of Gastrodia elata	8.690
	SRR5643664	five period of Gastrodia elata	6.010
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.730
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.700
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.390
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.080
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.980
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.080
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.300
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.300
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.640
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.610
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.030
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.030
SRP279888	Gastro	Gastrodia elata tuber	7.23
	Juven	Juvenile tuber	5.29
	Mother_Gastro	Mother tuber of Gastrodia elata	11.45
	Mother_Juven	Mother tuber of Juvenile	12.61