Detail information of GWHGAAEX016326/evm.TU.scaffold_75.12
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4168 | 1.00E-32 | Predicted RNA polymerase III subunit C17 |
| nr | gi|695048857|ref|XP_009412345.1| | 1.33E-41 | PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like [Musa acuminata subsp. malaccensis] |
| trEMBL | tr|M0TMK5|M0TMK5_MUSAM | 5.00E-42 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P04520_001} |
| TAIR | AT5G62950 | 1.00E-32 | RNA polymerase II, Rpb4, core protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000072 | 385768 | 397792 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016326
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03874.15 | RNA_pol_Rpb4 | 11 | 130 | 4.30E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0044237 | Biological Process | cellular metabolic process |
| GO:0006352 | Biological Process | DNA-templated transcription, initiation |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0030880 | Cellular Component | RNA polymerase complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 19.980 |
| SRR2545915 | Juvenile tuber | 19.460 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 18.630 |
| SRR5643514 | five period of Gastrodia elata | 14.900 | |
| SRR5643515 | five period of Gastrodia elata | 11.960 | |
| SRR5643524 | five period of Gastrodia elata | 14.130 | |
| SRR5643525 | five period of Gastrodia elata | 13.390 | |
| SRR5643528 | five period of Gastrodia elata | 10.630 | |
| SRR5643658 | five period of Gastrodia elata | 12.090 | |
| SRR5643659 | five period of Gastrodia elata | 11.120 | |
| SRR5643660 | five period of Gastrodia elata | 11.590 | |
| SRR5643661 | five period of Gastrodia elata | 12.670 | |
| SRR5643662 | five period of Gastrodia elata | 13.370 | |
| SRR5643663 | five period of Gastrodia elata | 10.990 | |
| SRR5643664 | five period of Gastrodia elata | 14.520 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.740 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 20.700 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.470 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.020 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.970 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.130 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.500 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.060 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.810 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.760 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.620 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.620 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 18.61 |
| Juven | Juvenile tuber | 23.40 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.31 | |
| Mother_Juven | Mother tuber of Juvenile | 16.96 |