Gene detail

Detail information of GWHGAAEX016327/evm.TU.scaffold_75.13

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0800	2.00E-31	FOG: Predicted E3 ubiquitin ligase
nr	gi\|695075999\|ref\|XP_009385262.1\|	1.44E-56	PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9LY41\|ATL4_ARATH	5.00E-32	E3 ubiquitin-protein ligase ATL4
trEMBL	tr\|M0SZJ9\|M0SZJ9_MUSAM	9.00E-52	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P18200_001}
TAIR	AT3G60220	2.00E-31	TOXICOS EN LEVADURA 4

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000072	449950	451753	-

Transcript Sequence
>GWHTAAEX016327 TTGACTTATATATCGGGAATTGTATATTACATAAAATCCTCTTTAATAATAATCCAATCAATCTCATTTTATCTAATTATGATTTCTTTAGTGTCACGAAAGACCCCTCCTTCCGAATGTTAGAGCTCTCTCTGCGTAGTCTTCTCTGCGACCACTCCGCATGACATATTTATGGATGGATGGATATATAAACCGAAAACCCAAAAAAACAAATAAAAAAAATAAAGAGAATGCTCCCAAAGGACCTAAACTGAAATAGTTAGGGGCCAAATCAAAAGAATGCTGCTGGCTTTCCCCACTCCCCCTTCTCCTTCCCCGCCGTCGCCGGCGATCTCCGATGCGCCTGTGAGCGCCGTCTCCGGCGATGGGCATTCCGGTGGGGCGACCATCATCATCATCGTCTCAATCATAGCCTTCATCATTGCAGCCTCGGCCTGCATCCGCCTTATTTCTCGGTTCAGATCTTTGTCGTCATCCAATCTTCTCCGCACTATTCCCCCCCCCGGGAATGCTGCGGATCCACCGCCGTCGGCATCCGATCGAGATAAGCTCATCTCCTCCCTTCCTCTGTTCAATCTCGGCTCATCCGTCTCCGCCTTTGGGAAATCCCAATCGCTTGACTGCGCCGTGTGCCTGTCGAACTTCCGCCCTCGCGACGAGCTCCGCCTGCTTCCGGCATGCCACCACGCCTTCCACTCCCAATGCGTCGACACCTGGCTGAGATCCACTCCTTCCTGTCCTCTCTGCAGAGCGTCCATCGAGCTGCCCCCGCCATCTGATCCGTCCAGATCTGGAAGCTTCCGGGTCGAAATCGGAAGCGTGAGCCGCAGGAGGCCGTCGGTGGATGGGGTCCCGGCCGGGCACGGGCGAGCCTATTCCTTGGGCTCTTCGTTGGAGTACTTGGTGGAAGAGGATGTGGAGGCAGTTTTGGAGTGCCTCAGAGGACCGCCGGAAGGGAAGCCGCCGGTGAACGGAGATAGACTACAGGCTACGGAGGTTACCGAGGCTGCCGGAGGCCGCGGATGGCTTCGTGACTGCGTCGATCGCTTGGCCACCTCTGCTTCCTCCTCCTTCAATTCCCTGAGGTTTTCTGGAAGAATCGCTGGCCACCTATTTGATCCGCCTCCGGCCATCGCCGCCGACAACTGCCGGGATTTGGAGGCCAGCGGTTTTGTCGAGTGGGAGGACACCGGGCTGGGAGGGCTCTACAGGTGGTTAGTGGGGGTATAAAGCTGCTGGAACAGAGGTAGGGATTCGAGCCGAATCGAACGGTTGGCGATGAGTGAGATCAACGGCTGCCGTCAATTGAACTGCGAGCGTAGTCCCTTGAGGTTCTTTTCCCATGCGATATGCTCAGATGCTGCTGTTGCTGCTGCTGCTTGCTGCATAATAATTACTCTTTATTTGAGCGCTTCTTCCTTCGCTTTCCGAATCTATATATCCTTCATTCCATTTTTAATTGATTTAATTCTATAGAATTTAAATCCGAAAAATTAATCTCTATAATACACCATCATTCTCTATAGATCTTATTTTTATAAATATAATGCTCAACAAAATTGTAAATATGCAAAAATTATTTTAAAAAGGTAATGTATATAAATATTTATTCAGA

Network for GWHGAAEX016327

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.5	zf-RING_2	114	157	1.10E-12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.280
SRP064423	SRR2545915	Juvenile tuber	6.400
SRP108465	SRR5643513	five period of Gastrodia elata	7.140
	SRR5643514	five period of Gastrodia elata	7.400
	SRR5643515	five period of Gastrodia elata	6.230
	SRR5643524	five period of Gastrodia elata	5.170
	SRR5643525	five period of Gastrodia elata	16.650
	SRR5643528	five period of Gastrodia elata	8.370
	SRR5643658	five period of Gastrodia elata	7.870
	SRR5643659	five period of Gastrodia elata	9.500
	SRR5643660	five period of Gastrodia elata	10.030
	SRR5643661	five period of Gastrodia elata	10.120
	SRR5643662	five period of Gastrodia elata	7.250
	SRR5643663	five period of Gastrodia elata	6.240
	SRR5643664	five period of Gastrodia elata	7.860
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.380
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.290
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	9.240
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.090
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.020
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.960
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.580
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.460
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.620
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.990
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.540
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.540
SRP279888	Gastro	Gastrodia elata tuber	5.11
	Juven	Juvenile tuber	4.41
	Mother_Gastro	Mother tuber of Gastrodia elata	16.74
	Mother_Juven	Mother tuber of Juvenile	14.37