Detail information of GWHGAAEX016329/evm.TU.scaffold_75.15
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 1.00E-63 | FOG: PPR repeat |
| nr | gi|672142147|ref|XP_008794926.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like [Phoenix dactylifera] |
| Swissprot | tr|Q9FMF6|PP444_ARATH | 4.00E-64 | Pentatricopeptide repeat-containing protein At5g64320, mitochondrial (Precursor) |
| trEMBL | tr|T1MWJ0|T1MWJ0_TRIUA | 5.00E-166 | Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_22367-P1} |
| TAIR | AT5G64320 | 1.00E-63 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000072 | 620833 | 624346 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016329
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 269 | 293 | 0.01 |
| PF13041.5 | PPR_2 | 297 | 345 | 4.60E-16 |
| PF13041.5 | PPR_2 | 395 | 445 | 3.40E-10 |
| PF13041.5 | PPR_2 | 470 | 514 | 5.00E-08 |
| PF13041.5 | PPR_2 | 536 | 584 | 4.00E-14 |
| PF13041.5 | PPR_2 | 607 | 655 | 1.30E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.220 |
| SRR2545915 | Juvenile tuber | 2.200 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.930 |
| SRR5643514 | five period of Gastrodia elata | 2.470 | |
| SRR5643515 | five period of Gastrodia elata | 2.690 | |
| SRR5643524 | five period of Gastrodia elata | 2.590 | |
| SRR5643525 | five period of Gastrodia elata | 0.960 | |
| SRR5643528 | five period of Gastrodia elata | 0.630 | |
| SRR5643658 | five period of Gastrodia elata | 0.640 | |
| SRR5643659 | five period of Gastrodia elata | 4.040 | |
| SRR5643660 | five period of Gastrodia elata | 3.830 | |
| SRR5643661 | five period of Gastrodia elata | 3.920 | |
| SRR5643662 | five period of Gastrodia elata | 4.090 | |
| SRR5643663 | five period of Gastrodia elata | 3.530 | |
| SRR5643664 | five period of Gastrodia elata | 2.480 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.760 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.500 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.350 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.170 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.580 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.150 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.440 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.880 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.570 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.260 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.340 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.340 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.49 |
| Juven | Juvenile tuber | 2.18 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.51 | |
| Mother_Juven | Mother tuber of Juvenile | 0.44 |