Detail information of GWHGAAEX016333/evm.TU.scaffold_75.19


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG21904.00E-125PolyC-binding proteins alphaCP-1 and related KH domain proteins
nrgi|672125549|ref|XP_008786196.1|9.36E-161PREDICTED: poly(rC)-binding protein 3-like [Phoenix dactylifera]
Swissprottr|P58223|Y4837_ARATH2.00E-18KH domain-containing protein At4g18375
trEMBLtr|F6GXK2|F6GXK2_VITVI2.00E-149Putative uncharacterized protein {ECO:0000313|EMBL:CCB44688.1}
TAIRAT4G260004.00E-125RNA-binding KH domain-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000072846848861643+
Transcript Sequence

Network for GWHGAAEX016333

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00013.28KH_1731242.20E-09
PF00013.28KH_11622287.60E-09
PF00013.28KH_13323952.40E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding
GO:0003723Molecular FunctionRNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms99.780
SRR2545915Juvenile tuber104.110
SRP108465SRR5643513five period of Gastrodia elata84.650
SRR5643514five period of Gastrodia elata85.710
SRR5643515five period of Gastrodia elata76.290
SRR5643524five period of Gastrodia elata80.030
SRR5643525five period of Gastrodia elata43.280
SRR5643528five period of Gastrodia elata50.650
SRR5643658five period of Gastrodia elata34.860
SRR5643659five period of Gastrodia elata98.480
SRR5643660five period of Gastrodia elata107.440
SRR5643661five period of Gastrodia elata107.990
SRR5643662five period of Gastrodia elata100.360
SRR5643663five period of Gastrodia elata93.710
SRR5643664five period of Gastrodia elata105.640
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_174.860
SRR6049655Rhizomagastrodiae_C368-T10_good_191.070
SRR6049656Rhizomagastrodiae_C368-T07_good_175.380
SRR6049657Rhizomagastrodiae_C368-T07_good_174.260
SRR6049658Rhizomagastrodiae_C368-T04_good_156.630
SRR6049659Rhizomagastrodiae_C368-T04_good_153.960
SRR6049660Rhizomagastrodiae_C368-T01_good_166.610
SRR6049661Rhizomagastrodiae_C368-T04_good_154.170
SRR6049662Rhizomagastrodiae_C368-T01_good_184.560
SRR6049663Rhizomagastrodiae_C368-T01_good_171.470
SRR6049664Rhizomagastrodiae_C368-T10_good_190.670
SRR6049665Rhizomagastrodiae_C368-T10_good_190.670
SRP279888GastroGastrodia elata tuber 125.93
JuvenJuvenile tuber150.49
Mother_GastroMother tuber of Gastrodia elata 58.50
Mother_JuvenMother tuber of Juvenile 78.65