Detail information of GWHGAAEX016335/evm.TU.scaffold_75.21
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1601 | 1.00E-59 | GATA-4/5/6 transcription factors |
| nr | gi|743778599|ref|XP_010919763.1| | 7.07E-126 | PREDICTED: GATA transcription factor 27-like isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q8W4H1|GAT26_ARATH | 5.00E-57 | GATA transcription factor 26 |
| trEMBL | tr|M0RT49|M0RT49_MUSAM | 2.00E-98 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P17690_001} |
| TAIR | AT4G17570 | 1.00E-59 | GATA transcription factor 26 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000072 | 957740 | 1004559 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016335
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00320.26 | GATA | 7 | 41 | 1.40E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-GATA |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.570 |
| SRR2545915 | Juvenile tuber | 3.010 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.920 |
| SRR5643514 | five period of Gastrodia elata | 2.290 | |
| SRR5643515 | five period of Gastrodia elata | 2.690 | |
| SRR5643524 | five period of Gastrodia elata | 3.210 | |
| SRR5643525 | five period of Gastrodia elata | 2.460 | |
| SRR5643528 | five period of Gastrodia elata | 1.960 | |
| SRR5643658 | five period of Gastrodia elata | 1.920 | |
| SRR5643659 | five period of Gastrodia elata | 2.090 | |
| SRR5643660 | five period of Gastrodia elata | 2.620 | |
| SRR5643661 | five period of Gastrodia elata | 2.250 | |
| SRR5643662 | five period of Gastrodia elata | 2.760 | |
| SRR5643663 | five period of Gastrodia elata | 2.800 | |
| SRR5643664 | five period of Gastrodia elata | 4.590 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.140 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.110 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.370 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.830 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.080 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.620 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.530 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.330 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.650 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.280 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.540 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.540 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.03 |
| Juven | Juvenile tuber | 2.58 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.16 | |
| Mother_Juven | Mother tuber of Juvenile | 3.16 |