Detail information of GWHGAAEX016337/evm.TU.scaffold_75.23


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG33922.00E-97Exon-exon junction complex, Magoh component
nrgi|672125717|ref|XP_008786283.1|5.02E-105PREDICTED: protein mago nashi homolog [Phoenix dactylifera]
Swissprottr|P49030|MGN_ORYSJ2.00E-100Protein mago nashi homolog
trEMBLtr|Q5YJQ9|Q5YJQ9_HYAOR5.00E-105Mago nashi-like protein {ECO:0000313|EMBL:AAS20975.1} (Fragment)
TAIRAT1G021402.00E-97mago nashi family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007210905531098928-
Transcript Sequence

Network for GWHGAAEX016337

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02792.13Mago_nashi91507.30E-81
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12877MAGOH Spliceosome map03040
RNA transportmap03013
mRNA surveillance pathwaymap03015

Gene Ontology

GO term OntologyName
GO:0008380Biological ProcessRNA splicing
GO:0005634Cellular Componentnucleus
GO:0035145Cellular Componentexon-exon junction complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms31.560
SRR2545915Juvenile tuber43.850
SRP108465SRR5643513five period of Gastrodia elata114.880
SRR5643514five period of Gastrodia elata155.540
SRR5643515five period of Gastrodia elata109.320
SRR5643524five period of Gastrodia elata151.060
SRR5643525five period of Gastrodia elata120.190
SRR5643528five period of Gastrodia elata104.420
SRR5643658five period of Gastrodia elata99.110
SRR5643659five period of Gastrodia elata86.060
SRR5643660five period of Gastrodia elata85.240
SRR5643661five period of Gastrodia elata83.600
SRR5643662five period of Gastrodia elata67.920
SRR5643663five period of Gastrodia elata74.770
SRR5643664five period of Gastrodia elata70.250
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_175.560
SRR6049655Rhizomagastrodiae_C368-T10_good_1138.280
SRR6049656Rhizomagastrodiae_C368-T07_good_1103.580
SRR6049657Rhizomagastrodiae_C368-T07_good_170.460
SRR6049658Rhizomagastrodiae_C368-T04_good_165.350
SRR6049659Rhizomagastrodiae_C368-T04_good_161.520
SRR6049660Rhizomagastrodiae_C368-T01_good_180.520
SRR6049661Rhizomagastrodiae_C368-T04_good_179.440
SRR6049662Rhizomagastrodiae_C368-T01_good_1128.590
SRR6049663Rhizomagastrodiae_C368-T01_good_1108.270
SRR6049664Rhizomagastrodiae_C368-T10_good_1138.610
SRR6049665Rhizomagastrodiae_C368-T10_good_1138.610
SRP279888GastroGastrodia elata tuber 73.23
JuvenJuvenile tuber79.64
Mother_GastroMother tuber of Gastrodia elata 83.17
Mother_JuvenMother tuber of Juvenile 55.87