Detail information of GWHGAAEX016341/evm.TU.scaffold_75.29
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|435846471|ref|YP_007308721.1| | 7.00E-73 | xanthine/uracil permease [Natronococcus occultus SP4] |
| KOG | KOG1292 | 0 | Xanthine/uracil transporters |
| nr | gi|743778443|ref|XP_010919683.1| | 0 | PREDICTED: nucleobase-ascorbate transporter 11-like [Elaeis guineensis] |
| Swissprot | tr|Q6SZ87|NAT11_ARATH | 0 | Nucleobase-ascorbate transporter 11 |
| trEMBL | tr|M0SYS6|M0SYS6_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P15470_001} |
| TAIR | AT4G38050 | 0 | Xanthine/uracil permease family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000072 | 1321912 | 1370897 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016341
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00860.19 | Xan_ur_permease | 235 | 654 | 1.90E-66 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.920 |
| SRR2545915 | Juvenile tuber | 16.020 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.460 |
| SRR5643514 | five period of Gastrodia elata | 15.070 | |
| SRR5643515 | five period of Gastrodia elata | 14.670 | |
| SRR5643524 | five period of Gastrodia elata | 14.740 | |
| SRR5643525 | five period of Gastrodia elata | 22.430 | |
| SRR5643528 | five period of Gastrodia elata | 16.250 | |
| SRR5643658 | five period of Gastrodia elata | 24.120 | |
| SRR5643659 | five period of Gastrodia elata | 15.390 | |
| SRR5643660 | five period of Gastrodia elata | 14.050 | |
| SRR5643661 | five period of Gastrodia elata | 15.660 | |
| SRR5643662 | five period of Gastrodia elata | 14.290 | |
| SRR5643663 | five period of Gastrodia elata | 17.720 | |
| SRR5643664 | five period of Gastrodia elata | 12.320 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.240 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.450 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.970 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.660 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.800 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.770 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.520 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.650 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.790 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.110 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.530 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.530 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.33 |
| Juven | Juvenile tuber | 12.55 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.56 | |
| Mother_Juven | Mother tuber of Juvenile | 8.76 |