Detail information of GWHGAAEX016350/evm.TU.scaffold_75.40


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428203095|ref|YP_007081684.1|1.00E-07RRM domain-containing RNA-binding protein [Pleurocapsa sp. PCC 7327]
KOGKOG01069.00E-92Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily)
nrgi|743854417|ref|XP_010940891.1|6.90E-124PREDICTED: serine/arginine-rich splicing factor RS41-like isoform X1 [Elaeis guineensis]
Swissprottr|P92965|RS40_ARATH3.00E-92Serine/arginine-rich splicing factor RS40
trEMBLtr|U5D163|U5D163_AMBTC6.00E-120Uncharacterized protein {ECO:0000313|EMBL:ERN19371.1}
TAIRAT4G255009.00E-92arginine/serine-rich splicing factor 35

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007220335102057477+
Transcript Sequence

Network for GWHGAAEX016350

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_14623.80E-13
PF00076.21RRM_1971599.10E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12893SFRS4_5_6 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms69.650
SRR2545915Juvenile tuber75.510
SRP108465SRR5643513five period of Gastrodia elata76.770
SRR5643514five period of Gastrodia elata58.130
SRR5643515five period of Gastrodia elata64.560
SRR5643524five period of Gastrodia elata55.010
SRR5643525five period of Gastrodia elata54.240
SRR5643528five period of Gastrodia elata44.960
SRR5643658five period of Gastrodia elata44.130
SRR5643659five period of Gastrodia elata90.500
SRR5643660five period of Gastrodia elata97.190
SRR5643661five period of Gastrodia elata87.270
SRR5643662five period of Gastrodia elata84.330
SRR5643663five period of Gastrodia elata82.220
SRR5643664five period of Gastrodia elata77.140
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_192.150
SRR6049655Rhizomagastrodiae_C368-T10_good_176.790
SRR6049656Rhizomagastrodiae_C368-T07_good_1101.110
SRR6049657Rhizomagastrodiae_C368-T07_good_198.070
SRR6049658Rhizomagastrodiae_C368-T04_good_1130.380
SRR6049659Rhizomagastrodiae_C368-T04_good_1134.520
SRR6049660Rhizomagastrodiae_C368-T01_good_1110.290
SRR6049661Rhizomagastrodiae_C368-T04_good_1120.820
SRR6049662Rhizomagastrodiae_C368-T01_good_1110.960
SRR6049663Rhizomagastrodiae_C368-T01_good_1123.830
SRR6049664Rhizomagastrodiae_C368-T10_good_1109.380
SRR6049665Rhizomagastrodiae_C368-T10_good_1109.380
SRP279888GastroGastrodia elata tuber 118.09
JuvenJuvenile tuber76.74
Mother_GastroMother tuber of Gastrodia elata 70.13
Mother_JuvenMother tuber of Juvenile 61.85