Detail information of GWHGAAEX016357/evm.TU.scaffold_75.50


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|434391327|ref|YP_007126274.1|2.00E-20(Myosin heavy-chain) kinase [Gloeocapsa sp. PCC 7428]
KOGKOG14469.00E-173Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2
nrgi|672175037|ref|XP_008807586.1|0PREDICTED: WD repeat-containing protein 82-B isoform X1 [Phoenix dactylifera]
Swissprottr|P93107|PF20_CHLRE3.00E-13Flagellar WD repeat-containing protein Pf20
trEMBLtr|M0SVH8|M0SVH8_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P03990_001}
TAIRAT5G662409.00E-173Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007222768282311210+
Transcript Sequence

Network for GWHGAAEX016357

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.31WD401001360.00025
PF00400.31WD402432650.088
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
K14962WDR82, SWD2, CPS35 mRNA surveillance pathway map03015

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms27.940
SRR2545915Juvenile tuber27.920
SRP108465SRR5643513five period of Gastrodia elata15.060
SRR5643514five period of Gastrodia elata15.510
SRR5643515five period of Gastrodia elata12.790
SRR5643524five period of Gastrodia elata14.390
SRR5643525five period of Gastrodia elata12.020
SRR5643528five period of Gastrodia elata11.090
SRR5643658five period of Gastrodia elata9.660
SRR5643659five period of Gastrodia elata38.460
SRR5643660five period of Gastrodia elata38.450
SRR5643661five period of Gastrodia elata32.430
SRR5643662five period of Gastrodia elata17.120
SRR5643663five period of Gastrodia elata30.120
SRR5643664five period of Gastrodia elata27.980
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_135.840
SRR6049655Rhizomagastrodiae_C368-T10_good_114.810
SRR6049656Rhizomagastrodiae_C368-T07_good_127.820
SRR6049657Rhizomagastrodiae_C368-T07_good_140.070
SRR6049658Rhizomagastrodiae_C368-T04_good_146.470
SRR6049659Rhizomagastrodiae_C368-T04_good_154.280
SRR6049660Rhizomagastrodiae_C368-T01_good_131.870
SRR6049661Rhizomagastrodiae_C368-T04_good_143.950
SRR6049662Rhizomagastrodiae_C368-T01_good_132.770
SRR6049663Rhizomagastrodiae_C368-T01_good_135.020
SRR6049664Rhizomagastrodiae_C368-T10_good_121.010
SRR6049665Rhizomagastrodiae_C368-T10_good_121.010
SRP279888GastroGastrodia elata tuber 46.44
JuvenJuvenile tuber35.10
Mother_GastroMother tuber of Gastrodia elata 24.39
Mother_JuvenMother tuber of Juvenile 28.41