Gene detail

Detail information of GWHGAAEX016359/evm.TU.scaffold_75.52

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|189218045\|ref\|YP_001938687.1\|	1.00E-36	dTDP-4-dehydrorhamnose reductase [Methylacidiphilum infernorum V4]
KOG	KOG0747	2.00E-178	Putative NAD+-dependent epimerases
nr	gi\|694995613\|ref\|XP_009389578.1\|	0	PREDICTED: probable rhamnose biosynthetic enzyme 1 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9LQ04\|RMLCD_ARATH	5.00E-179	Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase {ECO:0000305}
trEMBL	tr\|M0RWU2\|M0RWU2_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P03840_001}
TAIR	AT1G63000	2.00E-178	nucleotide-rhamnose synthase/epimerase-reductase

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000072	2354145	2361687	+

Transcript Sequence
>GWHTAAEX016359 AAAACACTTTATCTTCAACATAATATTTGAACATACTAACTAAATTTTGCTAAACACCATACTAAAATACCATAGTGGCTAAGAAGCTCAAGGTGGCATTTGACAATGGGACAATTGCATGTCATATTGAGACGTGAGGACGAAGATAAAAGTTATATATACAAATATTTGAGTGCCCTACGACCCCTTCTTTTAATTCCCACACACGGCAAAATCTCTTGTTTGCATCTCCTTTCCATCTCTTCCGCCGCCGCGTTAAAGCCACCTCCCTACAACCGCTACAGGGCATCATCCCCCTTCATGGGACTCCTTACGAACGGTTCCGGAGATTCCGCGCCACTCAAATTTCTTATCTATGGCAAAACGGGGTGGATTGGAGGTTTACTTGGCCGCCTATGCGATGAACGAGGGATTCTCCATGCTTACGGCACTGGGAGGCTGGAGAATCGACGGCAGTTGGAAGCCGACATTGAGTCAGTATCACCAACGCACGTTTTCAATGCTGCCGGCGTTACGGGGCGGCCGAACGTTGACTGGTGTGAAACTCACAAGGTAGAGACGATTAGAGCCAACGTGATTGGGACTTTGACGCTGGCTGATGTCTGTAAGGAGCGCGGCCTTATACTTGTTAACTATGCCACTGGTTGCATCTTTGAGTACGACAATTCACACCTGCTTGGGTCCGGGATCGGTTTTTTAGAAGAAGATGCGCCTAACTTTGTCGGATCCTTCTATTCCAAAACCAAGGCCATGGTTGAAGACTTGCTTATGAACTATGAGAATGTCTGCACTCTTCGCGTGAGGATGCCTATCTCATCAGATTTATCCAACCCTCGCAATTTTATCACTAAAATTACTCAGTACGAGAAGGTTGTGAACATTCCCAATTCAATGACGGTCTTGGATGAACTTCTGCCCATCTCTATAGAAATGGCAAAAAGAAACCTTACTGGGATATGGAACTTCACAAACCCTGGTGCGGTGAGTCATAATGAAATACTGGAGATGTACAGAGAGTACATTGATCCAGGCTTCTCTTGGAAGAACTTCACTCTTGAAGAGCAGGCCAAGGTGATTGTTGCTCCTAGGAGCAATAATGAACTGGACACCACCAAATTACAGGCACAATTTCCAGATCTTCTGCCCATTAAGCAGTCACTGATTAAGCATGTCTTCAAACCAAACCAGAAGGCCTCTGTGGCTTGAAGGCTTAACATTATATCATTCATCGTTCTAATTCAAGTCTCCAGCAGCCAGGAACTGCATCAAGTAATAAAAAGCAGCCATGCTTCATATATATCATCATTCGTTTCTTGTTGTAAAATGTTCTGAATTTACTGCTCAATACCTGTGCTTATGTTTGGGCCTAGAGATGCTATTGTTGTATTGTTCTGTTAATTTAACTTCTCTTTTATCGTGTCACAGCTGGTTTGAATTGTAATTGTAGTAGCATTGGAAGCGAGTATTTTTTAATTTGATATTTTTATTTTCCTGCTCTGTGTCATTGTTCATTTTGCATTACCTGAGAATTCTTCTTTCATAATGCCTGAGTTGGATCTATCGGATTG

Network for GWHGAAEX016359

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04321.16	RmlD_sub_bind	80	252	2.10E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12451	UER1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of antibiotics	map01130
		Amino sugar and nucleotide sugar metabolism	map00520
		Polyketide sugar unit biosynthesis	map00523

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	31.260
SRP064423	SRR2545915	Juvenile tuber	40.310
SRP108465	SRR5643513	five period of Gastrodia elata	126.130
	SRR5643514	five period of Gastrodia elata	120.960
	SRR5643515	five period of Gastrodia elata	125.250
	SRR5643524	five period of Gastrodia elata	121.130
	SRR5643525	five period of Gastrodia elata	173.060
	SRR5643528	five period of Gastrodia elata	201.540
	SRR5643658	five period of Gastrodia elata	205.150
	SRR5643659	five period of Gastrodia elata	105.470
	SRR5643660	five period of Gastrodia elata	100.280
	SRR5643661	five period of Gastrodia elata	102.880
	SRR5643662	five period of Gastrodia elata	99.170
	SRR5643663	five period of Gastrodia elata	92.900
	SRR5643664	five period of Gastrodia elata	105.790
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	111.040
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	167.380
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	125.310
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	128.890
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	100.900
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	119.440
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	116.420
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	105.210
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	118.520
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	122.960
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	132.000
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	132.000
SRP279888	Gastro	Gastrodia elata tuber	89.52
	Juven	Juvenile tuber	132.39
	Mother_Gastro	Mother tuber of Gastrodia elata	152.42
	Mother_Juven	Mother tuber of Juvenile	135.70