Detail information of GWHGAAEX016363/evm.TU.scaffold_75.59


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG18701.00E-62Ubiquitin C-terminal hydrolase
nrgi|672125723|ref|XP_008786286.1|2.16E-70PREDICTED: uncharacterized protein LOC103704673 [Phoenix dactylifera]
trEMBLtr|A0A068ULF3|A0A068ULF3_COFCA8.00E-69Coffea canephora
TAIRAT3G202301.00E-62Ribosomal L18p/L5e family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007225294882537902-
Transcript Sequence

Network for GWHGAAEX016363

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00861.21Ribosomal_L18p1292248.90E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02881RP-L18, MRPL18, rplR Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms15.440
SRR2545915Juvenile tuber19.410
SRP108465SRR5643513five period of Gastrodia elata5.880
SRR5643514five period of Gastrodia elata7.040
SRR5643515five period of Gastrodia elata4.910
SRR5643524five period of Gastrodia elata6.790
SRR5643525five period of Gastrodia elata0.310
SRR5643528five period of Gastrodia elata0.150
SRR5643658five period of Gastrodia elata1.150
SRR5643659five period of Gastrodia elata5.750
SRR5643660five period of Gastrodia elata8.590
SRR5643661five period of Gastrodia elata5.030
SRR5643662five period of Gastrodia elata5.960
SRR5643663five period of Gastrodia elata7.080
SRR5643664five period of Gastrodia elata4.860
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_17.700
SRR6049655Rhizomagastrodiae_C368-T10_good_12.290
SRR6049656Rhizomagastrodiae_C368-T07_good_17.960
SRR6049657Rhizomagastrodiae_C368-T07_good_19.480
SRR6049658Rhizomagastrodiae_C368-T04_good_18.560
SRR6049659Rhizomagastrodiae_C368-T04_good_17.520
SRR6049660Rhizomagastrodiae_C368-T01_good_110.130
SRR6049661Rhizomagastrodiae_C368-T04_good_110.390
SRR6049662Rhizomagastrodiae_C368-T01_good_18.140
SRR6049663Rhizomagastrodiae_C368-T01_good_19.740
SRR6049664Rhizomagastrodiae_C368-T10_good_16.820
SRR6049665Rhizomagastrodiae_C368-T10_good_16.820
SRP279888GastroGastrodia elata tuber 7.52
JuvenJuvenile tuber8.07
Mother_GastroMother tuber of Gastrodia elata 1.27
Mother_JuvenMother tuber of Juvenile 2.72