Detail information of GWHGAAEX016370/evm.TU.scaffold_75.67


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428303745|ref|YP_007140570.1|0aspartyl-tRNA synthetase [Crinalium epipsammum PCC 9333]
KOGKOG24110Aspartyl-tRNA synthetase, mitochondrial
nrgi|743780958|ref|XP_010920690.1|0PREDICTED: aspartate--tRNA ligase, mitochondrial isoform X1 [Elaeis guineensis]
Swissprottr|Q43776|SYK_SOLLC7.00E-15Lysine--tRNA ligase
trEMBLtr|A0A067KNA5|A0A067KNA5_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP37627.1}
TAIRAT4G337600tRNA synthetase class II (D, K and N) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007227585582810777+
Transcript Sequence

Network for GWHGAAEX016370

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01336.24tRNA_anti-codon1051895.80E-10
PF00152.19tRNA-synt_22126514.30E-109
PF02938.13GAD4035021.90E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01876aspS Aminoacyl-tRNA biosynthesis map00970

Gene Ontology

GO term OntologyName
GO:0006418Biological ProcesstRNA aminoacylation for protein translation
GO:0004812Molecular Functionaminoacyl-tRNA ligase activity
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0016874Molecular Functionligase activity
GO:0005524Molecular FunctionATP binding
GO:0005737Cellular Componentcytoplasm

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms13.110
SRR2545915Juvenile tuber11.910
SRP108465SRR5643513five period of Gastrodia elata10.280
SRR5643514five period of Gastrodia elata11.970
SRR5643515five period of Gastrodia elata9.410
SRR5643524five period of Gastrodia elata11.700
SRR5643525five period of Gastrodia elata11.910
SRR5643528five period of Gastrodia elata11.240
SRR5643658five period of Gastrodia elata10.650
SRR5643659five period of Gastrodia elata9.520
SRR5643660five period of Gastrodia elata8.930
SRR5643661five period of Gastrodia elata9.140
SRR5643662five period of Gastrodia elata8.960
SRR5643663five period of Gastrodia elata9.280
SRR5643664five period of Gastrodia elata9.450
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_115.370
SRR6049655Rhizomagastrodiae_C368-T10_good_117.250
SRR6049656Rhizomagastrodiae_C368-T07_good_112.390
SRR6049657Rhizomagastrodiae_C368-T07_good_115.170
SRR6049658Rhizomagastrodiae_C368-T04_good_117.190
SRR6049659Rhizomagastrodiae_C368-T04_good_116.020
SRR6049660Rhizomagastrodiae_C368-T01_good_114.790
SRR6049661Rhizomagastrodiae_C368-T04_good_117.130
SRR6049662Rhizomagastrodiae_C368-T01_good_117.360
SRR6049663Rhizomagastrodiae_C368-T01_good_114.470
SRR6049664Rhizomagastrodiae_C368-T10_good_114.980
SRR6049665Rhizomagastrodiae_C368-T10_good_114.980
SRP279888GastroGastrodia elata tuber 14.21
JuvenJuvenile tuber18.35
Mother_GastroMother tuber of Gastrodia elata 16.43
Mother_JuvenMother tuber of Juvenile 17.68