Gene detail

Detail information of GWHGAAEX016373/evm.TU.scaffold_75.71

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695020164\|ref\|XP_009397121.1\|	5.20E-48	PREDICTED: vegetative cell wall protein gp1 [Musa acuminata subsp. malaccensis]
trEMBL	tr\|A5AQZ6\|A5AQZ6_VITVI	2.00E-46	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN80329.1}
TAIR	AT1G32610	8.00E-23	hydroxyproline-rich glycoprotein family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000072	2921108	2922867	+

Transcript Sequence
>GWHTAAEX016373 GCGCTGTTAATAACATTATTAGCAAGGCTGCTTTGTTAATTTTCCCTCCGAGGCCAGTTAGTCGTTCGAGGTGGATCTGTTCTTTGTCAAAAGGAGACACCGTGTCTTTAATATTCTGGCCGCCCGATTGGAAAGAAACATTAAGATTCGCGCAACACTCCTTGTTAAATGTTCCATTATCTCCCCGTGACAACTTTGGTCCTTCGCTTGCAGGATGAGACTCCAGCTAACGCGTGAACTGCTTTGCTTGCTCCTCTTTGTCAACTTCGTTTACTGCCAACCGTGAGGGATTCCCTTCTTGCTGCTCTAGGGCTTCACTTCTGGTGAGCAATTTCCTCTGCAATTCTCTGGCAAATTCCTCACTCTCAAATCCATGAAACCTCCTTCCCGTCCTCCCTTGCCCTGAGATCGGAGGAACAGGTCGATTCGGTTCGATTCGATTTCCTACGTGATTCGAGATGGAGCACAACTCTTCTAGTCAGCATCACCTTGGAGTTAACAAACTCGGAAAGATCATTCGCAAGAGTCACCTTCAGCAGACGAGCTTCCAGAAGCTCACGCAGGCGGGTCTTAACCAGCAGCAGCCGGCTCCGCCTCCACAGCCTCAGGTGTACAACATCAGCAAGAGCGATTTTCGGAGCGTCGTTCAGCAGTTGACCGGAAGCCCTGCCCGAGATCCCACCGCAGGCGGATATCCGCCTTTACCTGCACGGCCGCCGCAGCCCAAGCACCCCAGCTCGCGCCTTATTAAGATCCGACCTCCTCCTCTCACTCCGATCTCTCGTCTGCCGCAGCCGCCTCTTTTCCAGAATCAGCTCCCGATTTCTGGTCATCCGCGAGCAGCGCCATCTCCTACTGCTGGCAACTTGGCATGGTCTGATTCCCCTGTCTCCGCTTACATGAGGTACCTCGAGAGTTCTCTGCTGACGTCGGATGGTTCTGGTAAGCCCTCACCCTTGGAAAACCCTCATCCTTCCTCCTTTGCGCAGGCACAGCTAGCCCTGCTGCCTTCTCCAGCCGCCCCTTTTCCTTTGCTGTCTCCCAATTCGCAGTTTCTTTTGCCGTCGCCAAGCTCGTTCTTGAATCTTATTTCTCCGAAATCACCCTACCCACTACTTTCTCCAAGGTTTCAATATCCGATTCCCCCAACCCCTAATTTCTCCTTTTCACCATTTCCTCAGTCAGGAGTCATGGGGCCAGGGCCTGGATCTCAGCCGCCGCCTTCTCCCAGTCTTTTGTTTCCTCAGTCGCCCTCGGGCTTCCTGCCTTTGCTTAGCCCTAGATGGAGGGATATGTAGATTGCTGTCATTGGATGACACTGCGACAGGTCATGGTGCGTCTGACTTTTCCTCTTCTTTGATCATGGAAGTTGGAAAGTAATAGATTAATTGAAAGCATGAAAAAAATGTTGATGAAGCATGCTGTTCATTTTCTACCTCTTGAAAATGGAGCAACCTTGACGGATGTGAGGGGAGATGGTGGCGTCTGTAGCAAAGTTGGCTCAGCGGATCCCATGTTAGCTATTTAACCAAAGAGTGGTAGTGTTGAGTGCTTGTACGTAACTTTATTGTAGAACTTATTAATTTTGTTTGATTGAAAACTTATACATGATAGAAAATTTCTTCACTGCTTTTTCTTGAAGACCAGCTAGTTTTTGATTTTTTTCTCTGCCAGCAATCTGAATGTTTAGATTACTGCTTTTTCTTGAAGACCAGCTAGTTTTGATTTTTTTCTCTGCCAGCAATGTGAATGTTTAGATT

Network for GWHGAAEX016373

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05678.13	VQ	46	71	5.20E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	41.010
SRP064423	SRR2545915	Juvenile tuber	37.690
SRP108465	SRR5643513	five period of Gastrodia elata	46.770
	SRR5643514	five period of Gastrodia elata	37.360
	SRR5643515	five period of Gastrodia elata	59.480
	SRR5643524	five period of Gastrodia elata	37.190
	SRR5643525	five period of Gastrodia elata	73.140
	SRR5643528	five period of Gastrodia elata	85.310
	SRR5643658	five period of Gastrodia elata	59.760
	SRR5643659	five period of Gastrodia elata	60.530
	SRR5643660	five period of Gastrodia elata	50.160
	SRR5643661	five period of Gastrodia elata	58.460
	SRR5643662	five period of Gastrodia elata	67.130
	SRR5643663	five period of Gastrodia elata	51.040
	SRR5643664	five period of Gastrodia elata	79.060
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	58.040
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	72.010
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	53.380
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	56.170
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	54.420
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	54.940
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	58.760
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	50.580
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	43.890
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	54.370
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	50.060
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	50.060
SRP279888	Gastro	Gastrodia elata tuber	55.49
	Juven	Juvenile tuber	67.51
	Mother_Gastro	Mother tuber of Gastrodia elata	139.23
	Mother_Juven	Mother tuber of Juvenile	149.09