Gene detail

Detail information of GWHGAAEX016379/evm.TU.scaffold_75.80

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|291288414\|ref\|YP_003505230.1\|	6.00E-08	RNP-1 like RNA-binding protein [Denitrovibrio acetiphilus DSM 12809]
KOG	KOG0117	6.00E-35	Heterogeneous nuclear ribonucleoprotein R (RRM superfamily)
nr	gi\|672125302\|ref\|XP_008786066.1\|	1.63E-142	PREDICTED: RNA-binding protein 47-like [Phoenix dactylifera]
Swissprot	tr\|Q9FXA2\|PABP8_ARATH	7.00E-10	Polyadenylate-binding protein 8
trEMBL	tr\|M0TFL1\|M0TFL1_MUSAM	2.00E-140	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P07710_001}
TAIR	HS9506671	6.00E-35	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000072	3023595	3043791	-

Transcript Sequence
>GWHTAAEX016379 AAACCATAAGCATATGAGTTCCTTAAAAAACCGCCCGTTTTAATTTCCACGTTTCTACGAACGCGGGTTAAGAACCGCTGTTCGGCTCCCTTTTACGCCATCGCCGCTGTTGCTGCCGCCGCCGCTCAAACTTCCACCAACCCTCCCCCAGGCTTCACCTCAAAAAAGCGCATCAGAAGAGCCAACAACCATCGAAAATGCCTCCGAGAAAGAAGAAGAATGTCAAAACCCCCCAGAAATCTAAGTCTTCCACTCCTTCCGCCGCCGCCGCCGCCGCCACAATCGATCCCGTTCCTACCTCGCCGGAACCCTCGCTTGCCTCTGATTCGGTTCTTTCTGCCGATTCCACCATAAAAAATGATCAACAACCCGTACTCGAACCAGAACCCGGTCACGGAACAGAAGCCGAGCTCGAGGTCAAACCCTCGCCGGAACAAGAGGTTATCGATACCACACCAGAAGCTTCAAATCCTCCATCGGAGGAAGTTTCTGAAACTCCCGTTGTGAATCTTTCCGAGGCAGCTTCCGCTGAACTTGCCGTGAAGCCCGGCACGAAGACGGTCATACGGGTGAGAAAGGTGCTGAAGAAGAAGATTGTGAAGAAGTTGGTTCCTAAGGGTTCGTTAACATCTAAGAAAGCAGAGAGCAGTGAGAAAGATCTTAACCCTAATTCTGTTTTGGACAGCAGTATACAAGAGGATGTAGTTGAGAGTACGTCTAAGAGTAATGATACTAATCAGCAATCAGAGTCTCTGAACACTGCCCCTGAGGCTAACGATACTGTGGAGATCAGGGAAGAATGTCAGCAGATGAAGGCAAAGGACGATGGCTTGAAGAGTAAGAAGGTTGTTAGGAAGAAAATTGTGAAGAAGTTAGTTCCTAAGGGCTCTTTAAGAGGAAAGAACGTGGATGCCGTTCTACTGAAAAATGGTTCAATGTCTTTGCCTGAGATCAGTGATAAGGACCATAACCTCAGTTCTTCTCCAGATAATCCTATTCAACAGGATGTATCTGAGAAGACCTTTAACTCGGATATTGATCAACTACAGGAGGCTGAGATGGTGGGGGATATGAAGCTTGAGTCAGGAAAAACTTTGGGTAATGTGGATATTAAGGAAGAATGTGGTCAGACGAAAGCAGTGGACGACAATCTGGAGAGTGGGAAAGAGGGTGATTTATTGGAAGCTGCAGAGACTAAGGAGCAGGAGGCAATGCACTTGTCAGAGAGAATGAAGAGGAGGAAGACAGAGATATTTATTGGGGGTTTGGATAGGGATGCAAAGGAGGAAGATATAAGGAATGTTTTTGGGAAAGTTGGGGAAATTTTAGAAATTCGGGTAATGATGGACGGACAAACAGGTAAGAACAAGGGTTATGCTTTCTTAAGGTATGTGGATCCCAAACATGCAAAGAGAGCTGTGACTGAGTTCTCCAAAGTTGAGATACGTGGAAAGATCTGTGGAGCTGCAGCTGTTCAGGGGAATGACACAATATTCCTTGGTAATATTGACAAAAACTGGAAGAAAGAAGATGTTATGAAATTATTAAAGGATGGTGGAATTGAGAATATAGACACAGTCACTGTTGTCATGGACCCTAACATTTCTGGCTCTAATCGTGGTTTTGCCTTTCTAGAACTTGAAACTAACAAAGATGCACAACGAGCTTACAAAAAGCTTCAGATGAAAGATGCTCTTGGGAAGGGTAGAAATATCAAAGTAGCATGGGCTGGTTCCTTCAATACTCCCGATGAAGAGGATATGCTAAAGGTTAAGTCAGTGTATGCTGAAGGAGTCCCTGATTCGTGGGATGAAGATAAGCTTATGGAGACCTTTAAAAAGTTTGGAGAAATAGAGCGAATTGTGTTAGGGAAGAATGTTAAATCAGCAAAGAGAAGAGATATTGCATTCATCAATTATAAGACCAGAGAAGCTGCTCTTTCATGCATTGAATCTTTGAGCAGTGATGATTTGATTGACAATGGATCTAAGGTAAATTTAAAAGTAACACTTGCAAAACGTGTACAAAAGGGAAATCAAAGCAAATTACAGAAATCTTCCGTTAATTACCCTCTGAAAGAGGCATACAATCCTGTCCTAGGTTCCCCAAAACAGGTCCTGAAAACAGCGGGCACCTGGACGTACCTGGGCACCCATGTTTCTATCTATTGGGCGCTTGGGCGCCTAGGCGCCTACCTCTTAAAATCAACAATTCTCCACCTAAGATCTCAAGTGCGCCCTCAGATCTCATATGTGTCACATGAGAGCTGA

Network for GWHGAAEX016379

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	352	419	5.70E-17
PF00076.21	RRM_1	432	498	8.30E-07
PF00076.21	RRM_1	529	589	5.50E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	90.890
SRP064423	SRR2545915	Juvenile tuber	106.420
SRP108465	SRR5643513	five period of Gastrodia elata	103.370
	SRR5643514	five period of Gastrodia elata	98.560
	SRR5643515	five period of Gastrodia elata	97.260
	SRR5643524	five period of Gastrodia elata	102.060
	SRR5643525	five period of Gastrodia elata	61.280
	SRR5643528	five period of Gastrodia elata	62.470
	SRR5643658	five period of Gastrodia elata	55.760
	SRR5643659	five period of Gastrodia elata	109.560
	SRR5643660	five period of Gastrodia elata	109.870
	SRR5643661	five period of Gastrodia elata	103.370
	SRR5643662	five period of Gastrodia elata	95.700
	SRR5643663	five period of Gastrodia elata	95.820
	SRR5643664	five period of Gastrodia elata	89.760
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	81.530
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	73.150
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	96.310
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	87.680
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	75.130
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	78.420
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	89.230
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	84.380
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	101.610
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	95.860
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	100.080
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	100.080
SRP279888	Gastro	Gastrodia elata tuber	83.10
	Juven	Juvenile tuber	139.22
	Mother_Gastro	Mother tuber of Gastrodia elata	55.27
	Mother_Juven	Mother tuber of Juvenile	137.83