Gene detail

Detail information of GWHGAAEX016380/evm.TU.scaffold_75.84_evm.TU.scaffold_75.82

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|313672810\|ref\|YP_004050921.1\|	2.00E-49	wd40 repeat, subgroup [Calditerrivibrio nitroreducens DSM 19672]
KOG	KOG0296	3.00E-161	Angio-associated migratory cell protein (contains WD40 repeats)
nr	gi\|695072600\|ref\|XP_009383429.1\|	0	PREDICTED: angio-associated migratory cell protein [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q3Y8L7\|DAW1_CHLRE	3.00E-30	Dynein assembly factor with WDR repeat domains 1
trEMBL	tr\|A0A0A0KBX7\|A0A0A0KBX7_CUCSA	0	Uncharacterized protein {ECO:0000313\|EMBL:KGN45882.1}
TAIR	AT1G71840	3.00E-161	transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000072	3092257	3117198	-

Transcript Sequence
>GWHTAAEX016380 AAAGTTGAACCAGCAATCCGATTTTTAATTCCTTGTTGTCTCCTCCTTCCTCTTCCCCTCTCTCTCACGGTTCTGATCTCCAGGGAACTCAGAGGCAGCGATGAATATCGACCATTTTGGCTGTGATAACAGTGAAGAAGACGACTACGATTCTGATGGAGAAGTCTTCTTGGAGGAGGATGATGTTATCCGCGAGATTGCCGTCGACGAAGAAGACCTCCCGGACGCGGACGATGAAGGGATGGACTCGGACACTGATCGTGAGGTGACTGATGATTCTGTTTATGTCTTCAAAGGACATACAGATGAACTGTATTCTGTTGCTTGCAGTCCAACAGATGCATCTTTGGTCTCCACAGGAGGTAAAGATGATAGAGGATTTATGTGGAAGATTGGCTCCATAGATTCAGGCTTAGAGCTTAAAGGTCATCGAGACACTGTTTCTACACTAGCTTTCAGTTCGGATGGGCAATTTCTAGCAACAGGTAGTTTTGATGGATTGATTCAAGTATGGGATGTAAATCTAGGCAATATCAAATGCACACTTGAAGGATCAGGAGGGGGCATTGAGTGGTTGAAATGGCATCCTAAAGGGCACTTGATACTTGCTGGATCAGAAGATTCCAGTGTTTGGCTGTGGAATGCTGACAAAAGTGTCACTCTTAATACCTTTTATGGTCATGCCAGCAGCGTCACATGTGGAGATTTCTCTCCTGATGGAAAAATCATCTGTACTGGTTCTGATGATGCCTCATTAAGGATTTGGAACCCAAAAAATGGAGATAGCATCAATATTAGAGGCCATCCTTATCATACGGACGGGCTAACATGTTTAGCAATAACCTATGATTCTGCATTTGCTTTAACGGGATCAAAAGATAGCTCCGTCCATATGGTGAACTTGGCAACCGGCAAGGTGGTCAGCTCTTTGGTCTCACATTCTGACTCTGTAGAATGCCTTGGGGTTTCTTCTAGTTCAAACTGGGCTGCTACTGGTAGTTTGGATCAGAAGCTTGTTATATGGGATCTTGAGCGCTCTTCTCCTCGATGCAGCTGCAAACATGAAGACGGGGTAACTTGCCTTGTGTGGATTGGCACGTCTCGCCACATTGCCACTGGGTCGATCGACGGAAAGGTGCGCATTTGGGACAGCCTTTCGGGCCGCTGCGTGCGCACCCTCTACGGTCATTCTGACGTTGTTCAGTCGCTCGCTCTGACCGCAGATCATAACTTTCTTGTTTCTGTATCCGATGATGCCACCGCCCGTGTCTTTGGCATCTCTGAATTCAGGTGAATGATAATGCTTCTCTTCTCAACTTAATCCAAAGAGTGCTTTGCTGTTGTGCAGTAGAGAAGACAAGCTGTTTGGTTTGGTTTATGTGCAAAGCCTGCTTGAATGTAATATAGATGTTTTGACATGTGAAAGATTGCCTTTTGTTTTATTCACTGTTGAATGTAATAAATGGTGTATTGGAAAGAAAACATGGGCGTCTCTTGGAAGTGGTTTGTAGAAAGCAATGTGAATTCAGCTTTCACTCTAATGCTGGAGGTGAATATGTTTAGGCTATTGTAAGGCCATAGAGCTCTTATGAAACCAAGGTTGAATGATGAATCTTCTTATGAGGTTCTTAATTCTATCAGAGGCTGAATTATGTGCATAAAGTCTTTGGTAATTTGCTATGTTTACATTATCTCAAGAATTTAACTAGTTTATACCATGCTATTAATAAATTCTATGTCTAAT

Network for GWHGAAEX016380

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	106	139	2.90E-07
PF00400.31	WD40	147	181	0.0015
PF00400.31	WD40	188	223	1.90E-08
PF00400.31	WD40	233	265	0.062
PF00400.31	WD40	272	309	5.10E-05
PF00400.31	WD40	321	350	9.20E-05
PF00400.31	WD40	354	390	0.00032

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	110.690
SRP064423	SRR2545915	Juvenile tuber	103.040
SRP108465	SRR5643513	five period of Gastrodia elata	47.630
	SRR5643514	five period of Gastrodia elata	48.200
	SRR5643515	five period of Gastrodia elata	49.940
	SRR5643524	five period of Gastrodia elata	50.220
	SRR5643525	five period of Gastrodia elata	55.770
	SRR5643528	five period of Gastrodia elata	71.300
	SRR5643658	five period of Gastrodia elata	81.500
	SRR5643659	five period of Gastrodia elata	50.650
	SRR5643660	five period of Gastrodia elata	64.300
	SRR5643661	five period of Gastrodia elata	54.060
	SRR5643662	five period of Gastrodia elata	63.830
	SRR5643663	five period of Gastrodia elata	55.280
	SRR5643664	five period of Gastrodia elata	66.960
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	77.670
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	45.450
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	66.520
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	78.140
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	75.380
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	99.930
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	81.260
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	76.180
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	60.250
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	68.550
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	62.170
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	62.170
SRP279888	Gastro	Gastrodia elata tuber	56.13
	Juven	Juvenile tuber	46.41
	Mother_Gastro	Mother tuber of Gastrodia elata	56.73
	Mother_Juven	Mother tuber of Juvenile	63.10