Detail information of GWHGAAEX016386/evm.TU.scaffold_75.89


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|383458605|ref|YP_005372594.1|1.00E-62ribose-5-phosphate isomerase [Corallococcus coralloides DSM 2259]
KOGKOG30753.00E-122Ribose 5-phosphate isomerase
nrgi|743760721|ref|XP_010938460.1|3.72E-144PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Elaeis guineensis]
Swissprottr|Q9S726|RPI3_ARATH8.00E-123Probable ribose-5-phosphate isomerase 3, chloroplastic (Precursor)
trEMBLtr|F6HTS6|F6HTS6_VITVI4.00E-135Putative uncharacterized protein {ECO:0000313|EMBL:CCB58087.1}
TAIRAT3G047903.00E-122Ribose 5-phosphate isomerase, type A protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007232150533221104-
Transcript Sequence

Network for GWHGAAEX016386

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06026.13Rib_5-P_isom_A992751.90E-60
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01807rpiA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
Biosynthesis of amino acidsmap01230
Pentose phosphate pathwaymap00030
Carbon fixation in photosynthetic organismsmap00710

Gene Ontology

GO term OntologyName
GO:0009052Biological Processpentose-phosphate shunt, non-oxidative branch
GO:0004751Molecular Functionribose-5-phosphate isomerase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms19.660
SRR2545915Juvenile tuber32.310
SRP108465SRR5643513five period of Gastrodia elata38.420
SRR5643514five period of Gastrodia elata41.690
SRR5643515five period of Gastrodia elata44.910
SRR5643524five period of Gastrodia elata42.100
SRR5643525five period of Gastrodia elata51.520
SRR5643528five period of Gastrodia elata49.510
SRR5643658five period of Gastrodia elata48.740
SRR5643659five period of Gastrodia elata47.040
SRR5643660five period of Gastrodia elata42.100
SRR5643661five period of Gastrodia elata58.620
SRR5643662five period of Gastrodia elata64.870
SRR5643663five period of Gastrodia elata59.150
SRR5643664five period of Gastrodia elata59.350
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_138.640
SRR6049655Rhizomagastrodiae_C368-T10_good_126.270
SRR6049656Rhizomagastrodiae_C368-T07_good_140.360
SRR6049657Rhizomagastrodiae_C368-T07_good_133.090
SRR6049658Rhizomagastrodiae_C368-T04_good_136.890
SRR6049659Rhizomagastrodiae_C368-T04_good_127.070
SRR6049660Rhizomagastrodiae_C368-T01_good_130.050
SRR6049661Rhizomagastrodiae_C368-T04_good_137.600
SRR6049662Rhizomagastrodiae_C368-T01_good_141.880
SRR6049663Rhizomagastrodiae_C368-T01_good_134.130
SRR6049664Rhizomagastrodiae_C368-T10_good_146.570
SRR6049665Rhizomagastrodiae_C368-T10_good_146.570
SRP279888GastroGastrodia elata tuber 63.79
JuvenJuvenile tuber53.77
Mother_GastroMother tuber of Gastrodia elata 40.29
Mother_JuvenMother tuber of Juvenile 37.00