Detail information of GWHGAAEX016389/evm.TU.scaffold_75.92_evm.TU.scaffold_75.93
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|330508854|ref|YP_004385282.1| | 3.00E-41 | tRNA pseudouridine synthase D [Methanosaeta concilii GP6] |
| KOG | KOG2339 | 0 | Uncharacterized conserved protein |
| nr | gi|672132813|ref|XP_008789997.1| | 0 | PREDICTED: multisubstrate pseudouridine synthase 7 isoform X1 [Phoenix dactylifera] |
| trEMBL | tr|M0SQT4|M0SQT4_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P21210_001} |
| TAIR | AT3G04820 | 0 | Pseudouridine synthase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000072 | 3267640 | 3327165 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016389
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01142.17 | TruD | 192 | 476 | 5.40E-70 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0001522 | Biological Process | pseudouridine synthesis |
| GO:0009451 | Biological Process | RNA modification |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0009982 | Molecular Function | pseudouridine synthase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 24.260 |
| SRR2545915 | Juvenile tuber | 28.650 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 15.030 |
| SRR5643514 | five period of Gastrodia elata | 15.170 | |
| SRR5643515 | five period of Gastrodia elata | 13.880 | |
| SRR5643524 | five period of Gastrodia elata | 14.060 | |
| SRR5643525 | five period of Gastrodia elata | 15.580 | |
| SRR5643528 | five period of Gastrodia elata | 9.670 | |
| SRR5643658 | five period of Gastrodia elata | 11.590 | |
| SRR5643659 | five period of Gastrodia elata | 16.050 | |
| SRR5643660 | five period of Gastrodia elata | 18.740 | |
| SRR5643661 | five period of Gastrodia elata | 16.190 | |
| SRR5643662 | five period of Gastrodia elata | 15.610 | |
| SRR5643663 | five period of Gastrodia elata | 18.040 | |
| SRR5643664 | five period of Gastrodia elata | 17.270 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 18.600 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.650 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 19.900 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.170 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 19.830 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 19.710 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.590 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 19.420 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 21.660 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 21.460 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 18.020 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 18.020 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 24.85 |
| Juven | Juvenile tuber | 18.65 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.01 | |
| Mother_Juven | Mother tuber of Juvenile | 14.71 |