Detail information of GWHGAAEX016400/evm.TU.scaffold_75.105


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG37860RNA polymerase II assessory factor Cdc73p
nrgi|659076389|ref|XP_008438653.1|0PREDICTED: parafibromin [Cucumis melo]
trEMBLtr|A0A0A0L7G3|A0A0A0L7G3_CUCSA0Uncharacterized protein {ECO:0000313|EMBL:KGN56964.1}
TAIRAT3G225900PLANT HOMOLOGOUS TO PARAFIBROMIN

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007235059093519543-
Transcript Sequence

Network for GWHGAAEX016400

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16050.4CDC73_N21041.60E-19
PF05179.13CDC73_C2293843.40E-49
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms27.240
SRR2545915Juvenile tuber22.360
SRP108465SRR5643513five period of Gastrodia elata22.110
SRR5643514five period of Gastrodia elata19.170
SRR5643515five period of Gastrodia elata23.420
SRR5643524five period of Gastrodia elata19.500
SRR5643525five period of Gastrodia elata30.720
SRR5643528five period of Gastrodia elata34.350
SRR5643658five period of Gastrodia elata28.260
SRR5643659five period of Gastrodia elata27.110
SRR5643660five period of Gastrodia elata29.730
SRR5643661five period of Gastrodia elata31.420
SRR5643662five period of Gastrodia elata31.980
SRR5643663five period of Gastrodia elata27.030
SRR5643664five period of Gastrodia elata25.910
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_127.740
SRR6049655Rhizomagastrodiae_C368-T10_good_132.180
SRR6049656Rhizomagastrodiae_C368-T07_good_122.230
SRR6049657Rhizomagastrodiae_C368-T07_good_127.100
SRR6049658Rhizomagastrodiae_C368-T04_good_125.820
SRR6049659Rhizomagastrodiae_C368-T04_good_128.780
SRR6049660Rhizomagastrodiae_C368-T01_good_126.600
SRR6049661Rhizomagastrodiae_C368-T04_good_122.620
SRR6049662Rhizomagastrodiae_C368-T01_good_120.010
SRR6049663Rhizomagastrodiae_C368-T01_good_122.810
SRR6049664Rhizomagastrodiae_C368-T10_good_124.770
SRR6049665Rhizomagastrodiae_C368-T10_good_124.770
SRP279888GastroGastrodia elata tuber 23.36
JuvenJuvenile tuber30.82
Mother_GastroMother tuber of Gastrodia elata 18.87
Mother_JuvenMother tuber of Juvenile 26.11