Detail information of GWHGAAEX016401/evm.TU.scaffold_75.107
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|297565110|ref|YP_003684082.1| | 4.00E-11 | Kelch repeat-containing protein [Meiothermus silvanus DSM 9946] |
| KOG | KOG1072 | 7.00E-146 | FOG: Kelch repeat |
| nr | gi|743774801|ref|XP_010917766.1| | 1.31E-177 | PREDICTED: F-box/kelch-repeat protein SKIP30-like [Elaeis guineensis] |
| Swissprot | tr|Q9M1W7|SKI30_ARATH | 1.00E-146 | F-box/kelch-repeat protein SKIP30 |
| trEMBL | tr|K4AC09|K4AC09_SETIT | 4.00E-165 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si036416m} |
| TAIR | AT3G63220 | 7.00E-146 | Galactose oxidase/kelch repeat superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000072 | 3596893 | 3620865 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016401
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01344.24 | Kelch_1 | 100 | 153 | 1.20E-05 |
| PF01344.24 | Kelch_1 | 156 | 202 | 4.50E-10 |
| PF01344.24 | Kelch_1 | 295 | 348 | 4.20E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.130 |
| SRR2545915 | Juvenile tuber | 5.640 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 17.900 |
| SRR5643514 | five period of Gastrodia elata | 16.900 | |
| SRR5643515 | five period of Gastrodia elata | 16.990 | |
| SRR5643524 | five period of Gastrodia elata | 15.410 | |
| SRR5643525 | five period of Gastrodia elata | 18.160 | |
| SRR5643528 | five period of Gastrodia elata | 14.990 | |
| SRR5643658 | five period of Gastrodia elata | 16.360 | |
| SRR5643659 | five period of Gastrodia elata | 25.520 | |
| SRR5643660 | five period of Gastrodia elata | 29.000 | |
| SRR5643661 | five period of Gastrodia elata | 33.410 | |
| SRR5643662 | five period of Gastrodia elata | 37.310 | |
| SRR5643663 | five period of Gastrodia elata | 29.180 | |
| SRR5643664 | five period of Gastrodia elata | 35.790 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 19.720 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.270 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 19.720 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.470 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 19.560 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 19.630 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.450 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.350 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 23.620 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 23.850 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 22.280 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 22.280 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 30.75 |
| Juven | Juvenile tuber | 15.35 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.44 | |
| Mother_Juven | Mother tuber of Juvenile | 10.48 |