Detail information of GWHGAAEX016406/evm.TU.scaffold_75.115
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672139158|ref|XP_008793356.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g48810 [Phoenix dactylifera] |
| Swissprot | tr|Q9M302|PP270_ARATH | 0 | Pentatricopeptide repeat-containing protein At3g48810 |
| trEMBL | tr|F6H707|F6H707_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB47954.1} |
| TAIR | AT3G48810 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000072 | 3665842 | 3667866 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016406
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13812.5 | PPR_3 | 99 | 157 | 0.0016 |
| PF13041.5 | PPR_2 | 183 | 229 | 8.30E-16 |
| PF13041.5 | PPR_2 | 245 | 294 | 1.40E-13 |
| PF12854.6 | PPR_1 | 311 | 342 | 1.20E-05 |
| PF13041.5 | PPR_2 | 350 | 398 | 2.40E-15 |
| PF12854.6 | PPR_1 | 416 | 448 | 8.20E-06 |
| PF13041.5 | PPR_2 | 455 | 504 | 3.90E-16 |
| PF13041.5 | PPR_2 | 526 | 574 | 5.80E-13 |
| PF13041.5 | PPR_2 | 596 | 642 | 7.10E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.360 |
| SRR2545915 | Juvenile tuber | 11.100 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.500 |
| SRR5643514 | five period of Gastrodia elata | 8.140 | |
| SRR5643515 | five period of Gastrodia elata | 8.080 | |
| SRR5643524 | five period of Gastrodia elata | 7.030 | |
| SRR5643525 | five period of Gastrodia elata | 7.520 | |
| SRR5643528 | five period of Gastrodia elata | 6.460 | |
| SRR5643658 | five period of Gastrodia elata | 5.960 | |
| SRR5643659 | five period of Gastrodia elata | 10.910 | |
| SRR5643660 | five period of Gastrodia elata | 11.070 | |
| SRR5643661 | five period of Gastrodia elata | 8.850 | |
| SRR5643662 | five period of Gastrodia elata | 11.700 | |
| SRR5643663 | five period of Gastrodia elata | 10.970 | |
| SRR5643664 | five period of Gastrodia elata | 8.800 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.520 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.410 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.010 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.150 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.950 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.150 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.550 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.310 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.230 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.860 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.920 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.920 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.51 |
| Juven | Juvenile tuber | 15.46 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.16 | |
| Mother_Juven | Mother tuber of Juvenile | 13.63 |