Detail information of GWHGAAEX016409/evm.TU.scaffold_75.119
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|108757327|ref|YP_634010.1| | 6.00E-162 | glutamate dehydrogenase [Myxococcus xanthus DK 1622] |
| KOG | KOG2250 | 0 | Glutamate/leucine/phenylalanine/valine dehydrogenases |
| nr | gi|695005132|ref|XP_009389003.1| | 0 | PREDICTED: glutamate dehydrogenase [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q43260|DHE3_MAIZE | 0 | Glutamate dehydrogenase |
| trEMBL | tr|M0S7G3|M0S7G3_MUSAM | 0 | Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185} |
| TAIR | AT5G18170 | 0 | glutamate dehydrogenase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000072 | 3720032 | 3737853 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016409
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02812.17 | ELFV_dehydrog_N | 33 | 159 | 2.10E-49 |
| PF00208.20 | ELFV_dehydrog | 176 | 408 | 1.20E-73 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0006520 | Biological Process | cellular amino acid metabolic process |
| GO:0016639 | Molecular Function | oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 60.860 |
| SRR2545915 | Juvenile tuber | 66.780 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 71.640 |
| SRR5643514 | five period of Gastrodia elata | 96.790 | |
| SRR5643515 | five period of Gastrodia elata | 62.450 | |
| SRR5643524 | five period of Gastrodia elata | 78.270 | |
| SRR5643525 | five period of Gastrodia elata | 40.670 | |
| SRR5643528 | five period of Gastrodia elata | 45.150 | |
| SRR5643658 | five period of Gastrodia elata | 24.700 | |
| SRR5643659 | five period of Gastrodia elata | 31.030 | |
| SRR5643660 | five period of Gastrodia elata | 31.930 | |
| SRR5643661 | five period of Gastrodia elata | 39.880 | |
| SRR5643662 | five period of Gastrodia elata | 44.630 | |
| SRR5643663 | five period of Gastrodia elata | 33.990 | |
| SRR5643664 | five period of Gastrodia elata | 39.010 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 81.010 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 94.080 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 124.070 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 54.870 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 68.930 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 54.420 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 44.310 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 59.820 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 112.940 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 67.980 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 155.110 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 155.110 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 53.53 |
| Juven | Juvenile tuber | 79.67 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 37.49 | |
| Mother_Juven | Mother tuber of Juvenile | 61.39 |