Gene detail

Detail information of GWHGAAEX016411/evm.TU.scaffold_75.121

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1901	1.00E-163	Uncharacterized high-glucose-regulated protein
nr	gi\|743887118\|ref\|XP_010910310.1\|	0	PREDICTED: YTH domain-containing family protein 2-like [Elaeis guineensis]
Swissprot	tr\|A9LNK9\|CPSF_ARATH	5.00E-11	30-kDa cleavage and polyadenylation specificity factor 30 {ECO:0000303\|PubMed:18479511}
trEMBL	tr\|M0SQV1\|M0SQV1_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P21380_001}
TAIR	AT3G13460	1.00E-163	evolutionarily conserved C-terminal region 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000072	3837984	3843395	+

Transcript Sequence
>GWHTAAEX016411 TTAAATTCCAAAAAATAGAAAAAATTCCGGTTTTGGAGGCGAACCCGAGGAGCTATTTGAATCACCGCTCCCCCCATTAGAAAGCCCTTCGCCTGTGGCGGCGCTCCTACGTCTTCTCCTTCTCTCTCTTAGGATCGGCGGTGCGAGTTCTGACCATGGCGGCTGTTGCTTCGGCTGCAGATCAAGCAACAGAATTGTTGCAAAAGCTGTCGATGGAATCCAAGAGCCAAACTCACGACGCTCATGAGGCTCCCAAGAAGCTTTCTGGAATTCAGTTTGGATCTGCAAATGCTGCTGAAGCACCAAAATTTCAAGTGCCATCATTCGACCGTTCTTTAACCCCTGTTCTTCCGGAGTATGGCGATCAGAATCTTTGTTATCTACCTAATGGATATCCCTCAACAGCATATTACTATGGAGCTTTTGATGGCTCAGTGGGCGAGTGGGATTATTCTCGATACCCAGAAGGTGTCGAGATGCCACATGGGGTTTATGGTGATATGTATCACCATGGATATGGATATGTGCCCTACAGTTCATATCATCCTTCCAATCCCACCGTGCCTTCTTTGGGTCACGATAGCCAAATATATGGTGCACAGCACTATCAATATCCTTCTCCATACTTCCAACCCCAGACATCCCCAAACGGAGCTTACTCTTCAAATAACGCTGTTCCTCAGGTAGATAATAATGCCAGCACTATTGCAGATAAGCCACCTTTTACTGTAGAGTCTGCCAAACCGAATTTAACCGGGGTTTCTAGCGGAAGTGCCAATAACATTAAAGAGCCTGCTCCGCCAAAGCAAAACCAGCAAAACTCATCAGTGGCCTCTAATGGCATATATGGAAGGGGGGTTTTAATCGGCGGGCACCCCTCTTCAGGATACCAAGACCCTCGGTTCAGTTTTGATGGAATGCGATCCCCGGTTCCATGGTTTGATGGAACCACATACTCGGATGCTTATGTCAGATCATCTGCTGCCAGCTCTGCATCTTCGCCTGCCCTAAATAATGCTAGCTTGGATTCTTCAAGAAGCCAGAATGCTCGCTCAGCCCCTCAAATCATGGGATACAATGCGGTTAGACCGACGCCGAGCATCATGAACAGGATGTACTCCGCAAACCGAATGTACGGTCAGTGCGGCAATACTTACAGATCCTGTGCCGGATTTGGATCAAATATGTATGATTCAAGAATCAATGATCGATGGGGATTCTTGGATAACAAATACAAGCCTAGAGTGGGCCAAGGCAATGGCTTTTTTACCTATGGAAATGAGAACTTTGATGGATTAAGCGAATTAAATCGGGGACCTAGAGCAAACCGCTTGAGAAACTTCAAAAATCCCACCACTAATGCAGTTACAATAACGCAGAGCCTTCCCGAAAATGCAGAGGATCCGAGCGTCGTCCCCAACCGAGAGCAATACAACAGAGCCGATTTCTCGTACCAATATTCCGATGCCAAGTTTTTCGTCATCAAATCCTACAGTGAAGATGATATTCACAAGAGCATAAAGTATAGCGTGTGGGCAAGCACTCCAAACGGTAACAAGAAGCTCAATTGCGCCTTCAAGGAGGCACAGGAAAAGGAGGCCGAGTGCCCAGTGTTTTTATTTTTCTCTGTGAATACAAGCGGGCAGTTTGTTGGCGTTGCGGAGATGGTTGGTCCGGTTGATTTCGACAAGACTGTTGATTACTGGCAGCAGGATAAGTGGAATGGGTGTTTCAATGTCAAGTGGCATATTGTTAAAGATGTGCCTAACAGCATTCTGAAGCACATTACGATTGAGAACAACGACAACAAGCCAGTTACCAACAGCCGAGACACTCAGGAGGTGAAGCTGGAGCAAGGCCTTGAGATACTGAAAATTTTTAAGGAGCACGCCAGCAAGTCCTCCATTCTGGATGATTTCAGCTTCTACGAGACTCGTCAGAAGGTGATGCAGGAAAAAAGGTCTAAACAGCAACTGCTGCAGCAGCAGGAATCGTCGGGCAGACTGATGGTTGAAATAAGAACTCCCAACTCTGTTGATGACAAAGGCAAGAAGGATTGCTCCAATTTAAATGCGTCCTAGCTTTCCATTCCAGCTTTTATTCCCTGCTGCCAAAGAAGATAACACCAAAATGATATATGCCTGTCAAAGAATGGATGGGGGGGGGGGGGTGTGAATTGATCTGATTTTGTTCTCTTTTTAGTGTCCCTCGACAAGGGGGTTTGGTCTTTTTCCTATTTCTTATCTCTTCTTTTGCTTCGGTTTCTTTTTGCATTTTTCATGGTTTTTGAGGTCTAGGTTGGTAAATGCTGTCTTTTTTCCATTCCAAGCGTTTTTGTTTTGTAAAGAGAAGCCTTCTTTCTTCTCTCAGGCTTTTGTACTTGAAAAAATGTGAAAGCAGATCATGTAGTATACTGCTATATGCAATATTGGAGTTGAAGGTCAAATATGCATCTTTATTTTTATAAATTTTGTGGGTTTGATTAATCGCTCAATATTTTAATTATTGATTTTATTGACTCGTTTCTTGATGATTCCATCCAAGCTTGATGGGTTTCCTATTGTTTTTCTTGACATCAAGTTAATCGTCGATACATCTATT

Network for GWHGAAEX016411

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04146.14	YTH	439	576	2.00E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003723	Molecular Function	RNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	281.650
SRP064423	SRR2545915	Juvenile tuber	447.900
SRP108465	SRR5643513	five period of Gastrodia elata	190.950
	SRR5643514	five period of Gastrodia elata	204.230
	SRR5643515	five period of Gastrodia elata	193.560
	SRR5643524	five period of Gastrodia elata	197.470
	SRR5643525	five period of Gastrodia elata	183.190
	SRR5643528	five period of Gastrodia elata	136.000
	SRR5643658	five period of Gastrodia elata	147.290
	SRR5643659	five period of Gastrodia elata	365.570
	SRR5643660	five period of Gastrodia elata	538.370
	SRR5643661	five period of Gastrodia elata	423.200
	SRR5643662	five period of Gastrodia elata	461.450
	SRR5643663	five period of Gastrodia elata	406.470
	SRR5643664	five period of Gastrodia elata	533.120
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	254.360
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	264.730
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	240.940
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	274.680
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	241.270
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	272.130
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	257.240
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	243.890
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	204.650
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	258.640
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	197.180
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	197.180
SRP279888	Gastro	Gastrodia elata tuber	347.51
	Juven	Juvenile tuber	388.89
	Mother_Gastro	Mother tuber of Gastrodia elata	186.41
	Mother_Juven	Mother tuber of Juvenile	325.54