Detail information of GWHGAAEX016412/evm.TU.scaffold_75.122
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|530780070|ref|YP_008431875.1| | 6.00E-42 | hypothetical protein N186_02405 [Thermofilum sp. 1910b] |
| KOG | KOG3302 | 1.00E-131 | TATA-box binding protein (TBP), component of TFIID and TFIIIB |
| nr | gi|568850810|ref|XP_006479090.1| | 3.64E-140 | PREDICTED: TATA-box-binding protein-like isoform X1 [Citrus sinensis] |
| Swissprot | tr|Q8W0W4|TBP2_ORYSJ | 6.00E-139 | TATA-binding protein 2 |
| trEMBL | tr|W5EQZ8|W5EQZ8_WHEAT | 2.00E-140 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Traes_4DS_700213C0B.1} |
| TAIR | AT3G13445 | 1.00E-131 | TATA binding protein 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000072 | 3845606 | 3859108 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016412
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00352.20 | TBP | 23 | 102 | 5.30E-32 |
| PF00352.20 | TBP | 111 | 194 | 1.10E-30 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03120 | TBP, tbp | Basal transcription factors | map03022 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006352 | Biological Process | DNA-templated transcription, initiation |
| GO:0003677 | Molecular Function | DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.440 |
| SRR2545915 | Juvenile tuber | 13.750 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.210 |
| SRR5643514 | five period of Gastrodia elata | 10.350 | |
| SRR5643515 | five period of Gastrodia elata | 12.240 | |
| SRR5643524 | five period of Gastrodia elata | 12.580 | |
| SRR5643525 | five period of Gastrodia elata | 17.560 | |
| SRR5643528 | five period of Gastrodia elata | 10.870 | |
| SRR5643658 | five period of Gastrodia elata | 15.840 | |
| SRR5643659 | five period of Gastrodia elata | 10.350 | |
| SRR5643660 | five period of Gastrodia elata | 8.000 | |
| SRR5643661 | five period of Gastrodia elata | 8.700 | |
| SRR5643662 | five period of Gastrodia elata | 11.100 | |
| SRR5643663 | five period of Gastrodia elata | 11.510 | |
| SRR5643664 | five period of Gastrodia elata | 7.940 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.390 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 18.100 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.970 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.300 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.950 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.490 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.990 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.710 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.950 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.060 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.590 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.590 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.24 |
| Juven | Juvenile tuber | 10.24 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 11.02 | |
| Mother_Juven | Mother tuber of Juvenile | 8.00 |