Detail information of GWHGAAEX016416/evm.TU.scaffold_75.129
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|328543573|ref|YP_004303682.1| | 2.00E-28 | cytochrome P450 [Polymorphum gilvum SL003B-26A1] |
| KOG | KOG0156 | 0 | Cytochrome P450 CYP2 subfamily |
| nr | gi|672135943|ref|XP_008791650.1| | 0 | PREDICTED: cytochrome P450 84A1-like [Phoenix dactylifera] |
| Swissprot | tr|Q42600|C84A1_ARATH | 0 | Cytochrome P450 84A1 |
| trEMBL | tr|A0A088B182|A0A088B182_9ROSI | 0 | Putative ferulate 5-hydroxylase {ECO:0000313|EMBL:AGJ84132.1} |
| TAIR | AT4G36220 | 0 | ferulic acid 5-hydroxylase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000072 | 4071846 | 4090317 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016416
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00067.21 | p450 | 32 | 492 | 3.50E-84 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Cytochrome P450 Family | CYP84A1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K09755 | CYP84A, F5H | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016705 | Molecular Function | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
| GO:0020037 | Molecular Function | heme binding |
| GO:0005506 | Molecular Function | iron ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.950 |
| SRR2545915 | Juvenile tuber | 1.820 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.730 |
| SRR5643514 | five period of Gastrodia elata | 1.070 | |
| SRR5643515 | five period of Gastrodia elata | 1.780 | |
| SRR5643524 | five period of Gastrodia elata | 1.030 | |
| SRR5643525 | five period of Gastrodia elata | 0.230 | |
| SRR5643528 | five period of Gastrodia elata | 0.240 | |
| SRR5643658 | five period of Gastrodia elata | 0.140 | |
| SRR5643659 | five period of Gastrodia elata | 0.120 | |
| SRR5643660 | five period of Gastrodia elata | 0.130 | |
| SRR5643661 | five period of Gastrodia elata | 0.130 | |
| SRR5643662 | five period of Gastrodia elata | 0.170 | |
| SRR5643663 | five period of Gastrodia elata | 0.100 | |
| SRR5643664 | five period of Gastrodia elata | 0.040 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 68.650 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 183.670 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 102.710 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 199.800 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 36.790 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 28.420 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 123.290 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 107.190 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 140.010 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 79.580 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 27.950 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 27.950 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.36 |
| Juven | Juvenile tuber | 101.71 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.16 | |
| Mother_Juven | Mother tuber of Juvenile | 6.44 |