Gene detail

Detail information of GWHGAAEX016422/evm.TU.scaffold_75.136

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695064588\|ref\|XP_009420850.1\|	3.27E-119	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q689D6\|RPD1_ARATH	2.00E-47	Protein ROOT PRIMORDIUM DEFECTIVE 1
trEMBL	tr\|I1LM18\|I1LM18_SOYBN	2.00E-111	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G31850.1}
TAIR	AT1G06440	4.00E-105	Ubiquitin carboxyl-terminal hydrolase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000072	4288789	4296909	-

Transcript Sequence
>GWHTAAEX016422 GCGGCGAGCACAAGGATCGAATGGATGCATGAGAGGTGAAGGATCATGAAGCTCATGGAGGAAGAGATGTGAACGGGATAACGGGGGAGGCGAGCGGACCCCTAATACGAACGGGGATGAGTAGACGCTCTTATTTATATGTATGCGGACATGTATGCAGGTGTAGGGTGGGTTACATGTAAGTGGGCTGTTTAGCATTTATAATATTTGTTGTCATTTCTTTTTCTTTTTTAGAATCTTCACTCTTCCCCGCTCCCGCTCCATGCCATAACTGCGCAAGCTCGAGGTCGTCCCTCACGACCTCCAGCTTTTCCACAGCGCATTCTCCTCTAATCCTCAAACCCTAAATGCATCCATGGGAGCCACATTCAGCGGCCAATCTGCTTCCATGCGTGCCTCAATTTTCTTCCTCCGTCATAAGACTACATCCGCCCAGTACGTCGCCGCCCGGCACCGCGATCCAACCTTGGAGAAGCTCATGGACAGCTACAGAGACCTAAACCCAGTCCTCTCCGTCCGAGATTTGATCATGGCGTCCCCCGAACTCTCCGTCCCTCTCTCCTTCCTCTCCTCCAGCCTCCTTCATCCCCATCGCCGCGGCCCTTCCCACTTCATCCGCTCCTTCCCCGCCGTCTTCTCCTTTCGGGCTCACCCCCTCCCCGCCCTCGTCCATCTGACCCCCGCTGCCGCCCGTCTCTCGGATCTCGAGCACGAGCATGCATCTTCTTCTCCCACGGCCGTCAGCGTCATCGTCCGTCTCCTCTCCCTCTCCCTTTCCCGCACCCTTCCCCTCCGCGCCATAATCCGAGTCCAGCGAGACCTCGGCCTCCCCCTTGACTTCGATGATTCCGTCATCGCTCGCAACCCCTCCATCTTCACTCTCTCCACCAACCCTAGTGAGCCTAACACCCACCTCGTCTCTCTTTCAGGTCCCGCCCCGGCTTTTGTTTCCGTTATTGACGGCCATGAATTCAAGCAGAGCTTCCCTCCGGGAATGCGGCTGACAAAGGACTTCCGGGCTCGCCTCAATGAGTGGCAGCGATTGCCTTATCCCCGTCCCTACGACCACAGCCCGTCTTTTGGATCCCAGAAGGGGGTTCTCGAGAAGCGGGCTGTGGCCATCGCCCATGAGTTCTTGAGCTTGACAGTTGAGAAGATGGTGGAGGTCGAGAAATTCAGCCATTTTCGGAAATGCTTTGGGATCGATTTCAATGTGCGCGATCTTTTCTTGGACCATCCCGGAATCTTCTATCTCTCCGCCAAGTGGAGAAGGCACACCGTATTTCTTAGGGAAGCTTATGACAGCCATGGATGCCTCTTAGAGCCCAATCCGATCTACGAGGCTAGGAGGAGGCTCCTCGACCTGGTGCTAATGCGCAAGAGAGGAGCTGCTTTTACTGATTGAGAATTTGAGATCATGATGTCAATCATCAACAGTCGAATGCCACGTCATCTGGATATAGG

Network for GWHGAAEX016422

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11955.7	PORR	33	342	2.20E-85

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.720
SRP064423	SRR2545915	Juvenile tuber	2.020
SRP108465	SRR5643513	five period of Gastrodia elata	6.370
	SRR5643514	five period of Gastrodia elata	5.480
	SRR5643515	five period of Gastrodia elata	4.680
	SRR5643524	five period of Gastrodia elata	7.150
	SRR5643525	five period of Gastrodia elata	4.320
	SRR5643528	five period of Gastrodia elata	5.180
	SRR5643658	five period of Gastrodia elata	4.890
	SRR5643659	five period of Gastrodia elata	6.270
	SRR5643660	five period of Gastrodia elata	5.570
	SRR5643661	five period of Gastrodia elata	7.820
	SRR5643662	five period of Gastrodia elata	6.120
	SRR5643663	five period of Gastrodia elata	5.800
	SRR5643664	five period of Gastrodia elata	5.640
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.600
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.130
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.670
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.340
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.160
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.860
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.720
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.800
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.970
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.070
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.320
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.320
SRP279888	Gastro	Gastrodia elata tuber	5.89
	Juven	Juvenile tuber	10.37
	Mother_Gastro	Mother tuber of Gastrodia elata	6.94
	Mother_Juven	Mother tuber of Juvenile	18.96