Gene detail

Detail information of GWHGAAEX016425/evm.TU.scaffold_75.140

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|312143697\|ref\|YP_003995143.1\|	2.00E-19	ribosome biogenesis GTP-binding protein YlqF [Halanaerobium hydrogeniformans]
KOG	KOG1424	0	Predicted GTP-binding protein MMR1
nr	gi\|743761322\|ref\|XP_010941628.1\|	0	PREDICTED: large subunit GTPase 1 homolog [Elaeis guineensis]
Swissprot	tr\|Q9M8Z5\|NSN1_ARATH	6.00E-32	Guanine nucleotide-binding protein-like NSN1 {ECO:0000305}
trEMBL	tr\|A0A061GZM1\|A0A061GZM1_THECC	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein {ECO:0000313\|EMBL:EOY33274.1}
TAIR	AT1G08410	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000072	4348312	4362978	-

Transcript Sequence
>GWHTAAEX016425 AAGAAGAAGAAGAAGAAGAAGAAGTAAGCGATCAACAAAGACAAAGGAACTAAACAAAAAAGGAACTTTCGAATCTTCAACAACCATCCCCCAAGGGTTCTGCCTCGAAGCTAGACAACAGCCACATCGCCTGAGTTGGAATCAAGGAATGGTCGGGAAAAAGGAGAATTTAGGGGGCGTTGGCCGCGCTCTCGTCCGGAAGCACAACCAGATGGTGCAGCAATCCAAGGAAAAGGGACATGCCCTTCGTCTTCAGCAGTACAAGGTTCTTGAATCCGTCACTGACATCGGCGACATCGATGCCATCGTCGAGCAGGCCGAGGCGGCCTCGCTTCTTTTCTCTGCTGACAATCCCGCACCAATCCTCCGCATCGATCTAGCTGGGAGTGAAATGACTGCGGAAGAGAGAAAGAGGGTGCAGAAAGAGGAGGAGGCAGTGCATGCCAGTAGTCTGCGAGTGCCCCGCAGGCCGCATTGGAATTCCAGGATGTCTGCTGAGGAACTTGATGTCAAGGAAAGGCAGGCATTTTTGGAGTGGCGCAGAAGTTTGGCAAGGCTTGAGGAAAACGAGAATCTTGTGCTTACTCCATTTGAGAAGAACATAGATATCTGGCGGCAACTTTGGCGAGTGCTTGAGCGAAGTGACCTTCTTGTTATGGTTGTTGATGCTCGGGATCCGCTGTTTTATCGCTGTCCTGATCTTGAGGCATATGCACAGGAAATTGATGAGCACAAGAGAACTATGCTTTTAGTGAACAAAGCCGATCTCTTACCATTATCTCTAAGAAAGAAATGGGCTGAATATTTCAACTCTAATGGCATCCTGTTCATATTCTGGTCTGCAAAATCTGCTTTTGCCATTCTTGAGGGCAAGAAGTTGATCAAGCAGTCTGAAGAAGAAGAAGAGGAGCAATCTGATCTCGGTACCAAGATCTACGGCCGGGATGAGCTCCTCTCCCGACTACAAACCGAGGCCGAGTCCATCTCATCCTCCCGGAAACCTGCGACCCGAAATGAAACCCGCAAATCCGATTTATACGATCCCGCAGCCGAACCGACCTCTACCCACGTTGTCGTGGGCTTTGTCGGCTACCCGAACGTTGGGAAGAGCTCCACCATCAATGCATTGGTGGGTTCGAAACGCACCGGGGTGACTTCCACCCCCGGAAAAACAAAGCACTTCCAGACACTCATCATATCCGATGAGCTCATCCTTTGCGACTGCCCTGGGCTCGTCTTCCCCTCCTTTTCCAGCTCCAGGTACGAGATGATTGCATCAGGCGTGCTGCCGGTCGACAGGATGACAGAACACAGAGAAGCGGTGCAAGTTGTGGCCGACAACGTCCCCCGCCTCATGCTGGAGAAAGTCTATAACATCAAGCTGCCTGATCCGAAGTCTTACGAGGCGCAGTTGAGGCCGCCAACAGCCGCCGAGCTGCTGCGAGCTTACTGCTTGTCCCGAGGGCACGTCAGCACGAGTGGGCTGCCAGACGAAACCCGTGCGGCTCGCCAAATACTTAAAGATTATATCGACGGCAAAATTCCGCACTTTGAGCAGCCGCCGGGAGCTGCAGACGACGTGGGAGAGGACGAAATGACGGAATCAGAGGGTGAAGAAGAATCGTCCTCGGTTTCTGGTGCCGCGGAATCTAATGAGCAGACTGGTCTTAAGCTTGTCCTGGAAGATCTGGAGTCGTTTGATTTGGGGGGAATGGTTGATGCAGAAAGGAAGAAGAATAAGAAGAAAAAGGATCAGGCTTCGAAAGATAAGAATCACAAGAAACCACAGAAAAAGAAGGACCGCTCATGGAGGGTGGGAAGTGATGGTGGCGATGGAATGCCTGTTGTGAGGGTGTTTCAGAAGCCTGCTGTGAATTGGGCAGGCATACGAGCATCCAGTTAGAAAAACATCTTCAAAATGGGTATGGATTCAGATTATATGACCGTTGGATGCTTTTATTGTGTTGTATAAATTTGCAGATTTTCTCAATGCATATTTGTATTTTTTTTTTTTGAAGTTGGGATATATTATTAATTTTTATTTTAATGCTATTTTTATGTTTTAATTAGTTTGCTGGATATTAAATTTTGTTTGATGTTAAATAAATTGTATAGACATTACAGGTTAAG

Network for GWHGAAEX016425

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01926.22	MMR_HSR1	310	378	1.40E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14539	LSG1	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0005525	Molecular Function	GTP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	32.040
SRP064423	SRR2545915	Juvenile tuber	35.760
SRP108465	SRR5643513	five period of Gastrodia elata	64.190
	SRR5643514	five period of Gastrodia elata	60.640
	SRR5643515	five period of Gastrodia elata	56.580
	SRR5643524	five period of Gastrodia elata	57.520
	SRR5643525	five period of Gastrodia elata	66.300
	SRR5643528	five period of Gastrodia elata	62.990
	SRR5643658	five period of Gastrodia elata	67.750
	SRR5643659	five period of Gastrodia elata	70.860
	SRR5643660	five period of Gastrodia elata	80.210
	SRR5643661	five period of Gastrodia elata	73.230
	SRR5643662	five period of Gastrodia elata	78.980
	SRR5643663	five period of Gastrodia elata	66.850
	SRR5643664	five period of Gastrodia elata	78.770
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	52.250
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	54.620
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	55.400
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	52.320
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	58.510
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	60.500
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	53.910
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	52.070
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	48.090
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	52.560
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	56.400
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	56.400
SRP279888	Gastro	Gastrodia elata tuber	58.25
	Juven	Juvenile tuber	61.06
	Mother_Gastro	Mother tuber of Gastrodia elata	47.92
	Mother_Juven	Mother tuber of Juvenile	61.23